NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS13997.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13997.1 Public Homo sapiens 22 RPS19BP1 24 110 108 CCDS HistoryNCBI Gene:91582Re-query CCDS DB by CCDS ID:13997.1See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13997.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000334678.8 ENSP00000333948.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000334678.8Link to Ensembl Protein Viewer:ENSP00000333948.3Re-query CCDS DB by Nucleotide ID:ENST00000334678Re-query CCDS DB by Protein ID:ENSP00000333948
Original member Current member NCBI NM_194326.4 NP_919307.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_194326.4Link to Protein Sequence:NP_919307.1Re-query CCDS DB by Nucleotide ID:NM_194326Re-query CCDS DB by Protein ID:NP_919307Link to BLAST:NP_919307.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_919307.1 136 Q86WX3 136 100% 0 0

Chromosomal Locations for CCDS 13997.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 39529492 39529623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 39529820 39529917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 39532395 39532523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 39532687 39532738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (411 nt):
ATGTCCGCCGCCCTGCTGCGGCGGGGCCTGGAGCTGCTGGCGGCGTCCGAGGCCCCCCGGGACCCTCCAG
GTCAGGCCAAGCCGAGAGGGGCTCCGGTGAAACGGCCCCGGAAGACGAAGGCAATTCAGGCCCAGAAACT
GCGGAACTCGGCCAAGGGAAAGGTGCCCAAGTCGGCACTGGACGAGTACCGGAAGCGAGAGTGTCGAGAC
CACCTCAGAGTAAACCTGAAGTTTCTGACCAGGACGAGAAGCACCGTGGCTGAGTCTGTGAGCCAGCAGA
TTTTGCGCCAGAACCGGGGCCGCAAGGCCTGTGACCGGCCTGTGGCCAAGACCAAGAAGAAGAAGGCTGA
GGGCACCGTGTTCACCGAGGAAGACTTCCAGAAGTTCCAGCAGGAATACTTCGGCAGCTAG

Translation (136 aa):
MSAALLRRGLELLAASEAPRDPPGQAKPRGAPVKRPRKTKAIQAQKLRNSAKGKVPKSALDEYRKRECRD
HLRVNLKFLTRTRSTVAESVSQQILRQNRGRKACDRPVAKTKKKKAEGTVFTEEDFQKFQQEYFGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH