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Report for CCDS31866.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31866.1 Public Homo sapiens 12 RLIG1 24 110 108 CCDS HistoryNCBI Gene:91298Re-query CCDS DB by CCDS ID:31866.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31866.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000356891.4 ENSP00000349358.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000356891.4Link to Ensembl Protein Viewer:ENSP00000349358.3Re-query CCDS DB by Nucleotide ID:ENST00000356891Re-query CCDS DB by Protein ID:ENSP00000349358
Original member Current member NCBI NM_001009894.3 NP_001009894.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001009894.3Link to Protein Sequence:NP_001009894.2Re-query CCDS DB by Nucleotide ID:NM_001009894Re-query CCDS DB by Protein ID:NP_001009894Link to BLAST:NP_001009894.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001009894.2 325 Q8N999-1 325 100% 0 0

Chromosomal Locations for CCDS 31866.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 88035649 88035738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 88040148 88040265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 88042825 88042920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 88043599 88043715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 88045582 88045779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 88046807 88046976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 88048234 88048422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (978 nt):
ATGAAGCGCTTGGGCTCCGTGCAGCGGAAAATGCCGTGTGTGTTTGTGACGGAGGTGAAAGAGGAGCCTT
CCTCCAAAAGGGAGCATCAGCCATTTAAAGTTTTGGCAACTGAAACTGTAAGTCACAAGGCATTAGATGC
AGATATATACAGTGCAATTCCAACAGAAAAAGTGGATGGAACATGTTGTTATGTTACTACCTATAAAGAT
CAGCCATACCTTTGGGCTCGACTAGATAGAAAACCCAACAAACAAGCTGAAAAAAGATTTAAAAATTTTC
TACATTCAAAAGAAAACCCAAAAGAATTTTTTTGGAACGTTGAGGAGGACTTCAAACCAGCTCCGGAGTG
CTGGATACCAGCAAAGGAGACAGAACAAATAAATGGGAACCCAGTGCCTGATGAAAATGGACACATTCCT
GGTTGGGTACCAGTAGAGAAAAACAACAAACAGTATTGCTGGCATTCCTCTGTAGTTAATTATGAATTTG
AAATTGCCCTGGTACTAAAACATCATCCTGATGATTCTGGACTTTTGGAAATTAGTGCAGTGCCACTTTC
AGATCTCTTAGAACAAACACTGGAACTCATAGGAACAAATATCAATGGAAACCCATATGGGTTAGGGAGC
AAGAAACATCCATTACATCTTCTTATACCACATGGAGCATTTCAAATAAGAAATCTACCTTCATTGAAGC
ACAATGATCTCGTGTCCTGGTTTGAAGATTGCAAAGAGGGTAAAATTGAAGGAATAGTGTGGCATTGCAG
TGATGGCTGTTTAATAAAGGTCCATCGCCATCATCTTGGCTTATGCTGGCCAATTCCAGATACTTACATG
AATTCAAGACCAGTTATTATCAACATGAACCTGAACAAATGTGACTCTGCCTTTGATATTAAGTGTTTGT
TTAATCATTTTTTAAAAATAGATAATCAGAAATTTGTTAGACTCAAAGATATAATATTTGATGTATAA

Translation (325 aa):
MKRLGSVQRKMPCVFVTEVKEEPSSKREHQPFKVLATETVSHKALDADIYSAIPTEKVDGTCCYVTTYKD
QPYLWARLDRKPNKQAEKRFKNFLHSKENPKEFFWNVEEDFKPAPECWIPAKETEQINGNPVPDENGHIP
GWVPVEKNNKQYCWHSSVVNYEFEIALVLKHHPDDSGLLEISAVPLSDLLEQTLELIGTNINGNPYGLGS
KKHPLHLLIPHGAFQIRNLPSLKHNDLVSWFEDCKEGKIEGIVWHCSDGCLIKVHRHHLGLCWPIPDTYM
NSRPVIINMNLNKCDSAFDIKCLFNHFLKIDNQKFVRLKDIIFDV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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