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Report for CCDS90269.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90269.1 Public Mus musculus 7 Sytl2 23 108 98 CCDS HistoryNCBI Gene:83671Re-query CCDS DB by CCDS ID:90269.1Re-query CCDS DB by GeneID:83671See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90269.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000239078.1 ENSMUSP00000158976.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000239078.1Link to Ensembl Protein Viewer:ENSMUSP00000158976.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000239078Re-query CCDS DB by Protein ID:ENSMUSP00000158976
Original member Current member NCBI NM_001368878.1 NP_001355807.1 Accepted alive Link to Nucleotide Sequence:NM_001368878.1Link to Protein Sequence:NP_001355807.1Re-query CCDS DB by Nucleotide ID:NM_001368878Re-query CCDS DB by Protein ID:NP_001355807Link to BLAST:NP_001355807.1

Chromosomal Locations for CCDS 90269.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 90348792 90348892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 90358133 90358284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 90360045 90360177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 90371457 90371538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 90372827 90372941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 90375389 90376192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 90379502 90383182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 90385043 90385144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 90387503 90387556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 90388868 90388915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 90392359 90392453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 90395163 90395282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 90396474 90396643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 90399184 90399286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 90401398 90401568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 90403031 90403109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 90406911 90407010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 90408356 90408561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 90409402 90409547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (6462 nt):
ATGATCGACTTAAGTTTCCTGACAGAGGAGGAGCAAGACGCCATCTTAAAGGTTCTGCAGAGGGATGCTG
CCCTGAAGAGGGCTGAAGAGGAGAGAGTCAGACATCTGCCTGAAAAAATTAAGGATGACCAACAACTAAA
GAATATGAGTGGCCAATGGTTTTATGAAGCTAAGGCAAAAAGACACAGGGACAAAATCCACGGTGCTGAC
ATCATCAGAGCATCCATGAGAAGGAAGAAGCTCCCAGCGGCAGCTGAGCAGAATAAGGACACAGCAATGA
GGGCAAAGGAGAGCTGGGTGAATAATGTTAACAAAGATGCTGTCCTTCCTCCAGAGATAGCTGTTGTGGA
AGAGCCAGAAGATGACACAGATCCCGCAGGCCCAAGTTCCAGTTTGGTGGATCCAGCTTCCAGTGTGATT
GATATGTCCCAGGAAAGTACGAGGACTCCAGCTGTGTCTCTGCCCAAGCAAAGGAAGAATCCATTCAACA
GCCCCAAGCTGCCGGAAGATCACTCCTTGCAACAAACCAAACCCGAGCAGTCAAAAACTGGAAAAGCTGG
TTTATTTCAGATTTCAAAAGAGGGTGAGTTGTCAGAATCAAAAGAAAAGTCATCTATCCCAGATATGCCA
CGTCAGCAGTTAGAGAAACCAAAGCAAACTGTATCCACAGAGCCTGAAAATGCGTCTCATACCAAAGCTC
CAATCCCCAAAGCCAGAAAACTGATCTACAAATCAAATGACTTAGAGAAAGATGATAACCAGTCTTTTCC
CAGACAACGGAGGGACTCCCTGAATGCGAGAGGGGCTCCAAGAGGGATCCTAAAGCGCAACTCCAGTTCC
AGCAGCACGGACTCAGAGACCCTCCGTTTAAATTACAACCTTGATCCGAAAAGCAAAATCCTATCACCTG
GCCTAACCATCCACGAGAGAATCTCTGAGAAGGAATTTTCTTTAGAAGACGACTCTTCCACAAGCTCACT
AGAGCCGTTAAAGCACGTGAGATTCTCTGCCGTGAAGAATGAGCTTCCACAAAGTCCTAGACCCGTCCTT
GGCCAGGAAGTGGGAGAATTTACTGTTTTAGAATCTGACCAGTTGCAAAATGGAACTGAAGATGCAGGGG
ACATAGAGGAGTTTCAGAATCACCCAGAGCTCTCCCACAAAACACCTTTGTCTCATTATCAGTTAGTGTC
AAGCCCAAGCGATTCAGGAAGGGAAAGAGAACAGCTGATGTCTTCTGGGTCTGCTCCAAGAGATGAGATC
CCTTGTCATTCAGACATTCTACCCACAGGACCTCAGTGTGTTGAGAGTTCATCCGTCATCAATGGGCAAC
AAGAGAAATCATCACATTTTACAAAGCTTCCATCAGAATTGTCCAAAAGCCCTTCCGATGAACTGACTCA
GTGTGGTGAGCCTGAGCCATCACAGACAGCAGACCACAGTTTTAGAGACCATCGGCAAGGTAAGCCCCTT
CTCAAGGCTCTCACTGCTCAGACATCCTCACATGTGGGTCCATGTGCTACAGAGATAAGGAAGACAACTG
ACGAGTCCATATCTAAAGTCCTAGACTGGTTTAACCGAAGTTCTCATACAGAGGACACTATGTCATCCCT
CCAACATCTCCAAGGAATAGATCTCAAACAGCAAACAGACTCAAAAGCACAGATTAGCAACGCCTTGATG
ACAGACAATACCTGTCTGGAAGAAGACGACTCAAAAGTCCCAATGCCCACTAAAGTTAAGTTGAAGCCTG
TGAGGTCTGACTTGGCATTCCAAGAAGAAGGAGCTATGCTGGTTTCTGTAACTTGCCAAGATAGTGATGC
ACTTCTCAAGTCTAACTCTGAGAATTTGTCCCAACAAGGCACCCACAAGGAAGGTCCAGATACACTGCAA
CGATTTGAAACCTACAGAATCCCAAGTCGCAGGAATGAAAACAAGGGTGGTAGCCAAGGTTTGGAGAGTA
CAGAAGGAGTGGGGACCCTTCCTGCAGACGGTGACGACCTGCTCAGGGCTCTGAAAAGGTCTGATTCAGA
AGCCCAAGTCCCATGGAACACTAACCATCCTGAAAGCTTAGGTAAAGAAGAAACCGAATTCCATCTGCCT
CAAAAAAGTAAGGGGAGCACACATATAAATTCAGACTCTTCAGTAATTGTCCTAGGCTCTATTTTGAAAG
ATGATACAGAGAGGAAAAGCAAAACCAAGAAGACTTCCCTCCTAAAATCTTCCCTAGAGACAGAGAATAG
TGCATTACCCCTTGGGGCTGCCGACAATGGATCTTCTTGGAAGAAGCCTGAGGACCAAAAAGAAGCCAGT
GAGGACCCCAAGAACCAAGTGCTGAGAGAGAAATACAAGCGAGTGAGCGACCGAATATCTTTTTGGGAAG
GAGGCAAAGCTGGTGCTAAGTTAAAGGCATCACAGCTCACATCTTCTTGCAGCCAGCAGCTTTCTGCTAA
AGCACACCAGCCCAGGAAGTCACAAGTCATGTCCCTGGGCAGTTTATCTTCAGGTCAAAGTGACTATAGT
GAAGTCACAGCTAAACCAGTGGTCTTTGATGAGGATGGCCAAGCACCCCATCTCTCACGTTTTGATTCCT
CAAATAAACCTGAAACAACCAGGCCCCTGATGTCAGGTCTATCCAAAAACTATGCTGTAGGTAACCAGTC
TGATAAAGTAACTCAACTTCAAACTATGGGGAATGAAACACACCCTTCTTTGGAGAAAGACAGACTTGTG
ATTGATAAATCAAATGGCAGCTTCAAAGTTCTGTCCCTAAGAGAAAGAATGGATGAACCCAATACAGAAC
AAGTCTATAGTCACTCTCAGTTTGAGAATCTGAGGAAGTTTTGGGGCCTGGGAGCTAATGTAAACAGTAA
ACACAATGATGGGAATAATACAGCAACAAACAAACAAACTTCTGTGCCACTGAACATCCAGAAATCCAAG
GAGTTTAACGCCATGAAATTATCAAGAGAAAAGACCCAGGAAGTAGAAGAAGGAAGACACTTAAGGCAGG
GAAATGTTATAGCTGCAGAAGAGATGGAGAAATTAAACTTTAAGTGCATGCCTCAAGAACCACCAGATGA
AACCATATTTCCGCAAAAAACACTCTCAATTGAGCCTTCAAAGGAAAATGAAGGAAAAAATACAGAATAC
TTTGGTACTCAGGTGATTAAAAAGGCTTGCTCAGAGCAAGAGATTCAAGAATCCATAGTGAAAACAAGCA
TTTTGCCTAAAGTCTCGAAAGACACGTTCAATGACAGGTTACAGAAGTTGCTGGCAGAAGCCACATTACC
AGCAAGCCAGACTTCTGGCAAGGAAGTTCATGAACAGCAAGCACTCAAAGTAGGTGTTTCTGAAAATGGG
AAAAGTTTTGCCAAGGATGAGGAAGAAGTCACAGGGCTCAGGGAGAGCCCCAAAGAGCCCCAAAGAAGAA
ATCAGCAGGACTGTAGTGTAGACAAACTCCTAAAGGAATCAACTAGAACTCCATTGAGTCCCTTACAATC
CCCGCTGGAAGCTGTTACTACTAGACCCATCTCCCCGCTTAAAGATGACCTATTGTTTGAAAAGTGGATG
AAAGAGAACCACAGTCCTTCAGCAGATCAGAGAGAGATCACAGCTCCTTTTCCACAGGGTGTTGGAATTT
TGGCAGGTGCAGATCTCATCCAGAAGGACAAACATTGTAACACAGAAGCTATGCTTCAGTTGGCTGCAGA
AGGCTCTCCTCCATTGGCTCAGCTTCCCCATTGTTTTGATGGAGTTTCCAGTTCTCCAGCAGATATGTCT
TTATCTTGGGATGCTCAGCTTCCATCTGAGAACGGCACGTTGCCTTCTCAGAAGGAAATTTCGGAGGCTA
TAGAGAAAGTTGTTCTTCCTTCCAAACCAGCAGCAACTGATGTAAATGCTGTGTTACAAAAGCTACTTAG
AGAAGCTGGAGAAGTGGACGCCAAGCTCCCTGAAAGAGAGCAGACAGCAGGTACACCCTCATGTCCTCAG
AGAGTGAGTCCCCTATGGCCTGCTCCAGACCCTGTTGTTCCAAATAAGGACTTCCATTCTTTTTGCACGG
TTCCTGATACAACTCATGAAGGTCGGTCTCACTTATCTGCCAGAATGTCACCATCAGCACATGCCACTAT
GTCACCCACTTCTACTGTAACTCAGTATGGCCAGAGGCTACTTCAGGAAGTGGCAGAGACAGTGAGGGAA
ACAGTCATTCAGCCCAAGTCACAGTACCCTGAATTCAGGGCTGGCTTGGAAAAACTACTGAAGGAAACAC
TACAAACATCCCTGTCAAAAGATAAAAAGGATACAATGACTATTTCTCCATCAGCCTTAACAGGTAGCTG
TGAGATGTCCCATCAACTTTCTTCTGAATTCCATCTTACAGAAATACAAGAAACTGTAGAGAAGGCTGAG
GCTCCATCAGTAACTGAGAGTAGTTTTGATGTTGGTCTTGAGAAACTTCTTAAAGAGATGTCGGAAGGAC
CTTGCCAGCTCCAGGCATCAGGGAGAAGAGACACTTTAGAGAAGCAGCCTTCGCAAGTAGAGCAAGCAGG
GTTCATGGGGGAAATACCCCATCATATTTTGGATGGCCCAGGAGCCTCTAAAATGAAGGTTTCATGTAGT
GGTTTGGAATCTCAAATCAGCCAGTGTGATAAGCAATTAGGAGGAGATGAAGCTGTGACTGGCCCATTGA
TAGATGTCCAGGATAACAAAAGTGGGTTTGAGGTCCCTGAATGCTCACAACTTCATGAAGACCATAAAAT
AGAGACCAATGGAACTATACAATTTGTAGAGGACAAAGGCAGAGAAAAGGTCATTACAGGAGAAACACAG
GCTTCCCAGGAACCAGGCTTTGAAGAAGCTCCTAAAGAAATGAGTGTGTCCAGAAATAAGCACTCCATTG
TTCTTCTGGAAACAAAAGGAAAGGCTATAAAAACGAGGGAAGTTAAGTTGGTACTAGCAACACCATATAA
GAGACAAGAGGAAGAGCAAGGGCCAGAGGCATGCTCAGAATATGAGTTTTCAGATGGGAACACCAGCTCT
AACCGGGAGAACTGGAGAAATACCTCCAGTTCAGAAGAAGAGCACAGCCCTGTTTTGAAAACTCTGGAAA
GAAGAGCTGCTAGGAAATTGCCTTCCAAAAGTCTAGAAGACATTCCATCAGATTCATCAAATCAAGCAAA
AGTAGATAATCTGCCTGAAGAATTAGTGCGTAGTGCTGAAGATGATCAAAAAGCCGACCAAGAACCAGAT
ACAAATGAATGTATACCAGGAATTTCCACAGTGCCTTCACTGCCTGATAATCAGTTTTCCCACCCTGACA
AACTCAAAAGGATGAGCAAGTCCGTGCCAGCATTTCTTCAAGATGAGAGCGATGACAGAGAAACAGACAC
AGCATCAGAGAGCAGCTACCAGCTCAGGAGATACAAGAAGAGCCCCAGCTCATTAACCAATCTTAGCAGC
TCCTCTGGCATGACGTCCTTGTCCTCTGCGAGTGGCAGTGTGATGAGCGTTTACAGTGGAGACTTTGGCA
ACCTAGAAGTGAAAGGAAGCGTGCAGTTTGCACTCGACTACGTGGAGTCCCTGAAAGAGCTGCATGTGTT
TGTGGCCCAGTGTAAGGATTTAGCAGCAGCAGATGTTAAGAAACAGCGCTCAGATCCGTATGTAAAGACC
TATCTGCTACCAGACAAAGGCAAAATGGGCAAGAAGAAGACACTCGTAGTGAAGAAGACCTTGAATCCTG
TATACAACGAGATATTGCGGTATAAAATTGAAAGGCAATTCTTAAAGACGCAGAAGTTGAACCTGTCCGT
TTGGCATCGGGATACATTTAAGCGCAACAGCTTTCTGGGGGAGGTGGAGCTCGACCTGGAAACGTGGGAT
TGGGACAGCAAACAGAACAAACAGCTGAAGTGGTACCCACTGAAGAGGAAGACAGCACCAGTTGCCCTCG
AGACAGAAAACAGAGGTGAAATGAAACTAGCTCTCCAGTATGTTCCGGAACCAAGCCCTGGCAAAAAGCT
TCCTACAACTGGAGAAGTCCACATCTGGGTGAAGGAATGCCTTGACCTCCCACTGTTGAGGGGCAGCCAC
CTAAATTCTTTTGTTAAATGTACCATCCTTCCAGATACCAGTAGAAAAAGTCGCCAGAAGACAAGAGCTG
TAGGGAAAACCACCAACCCCGTCTTCAACCATACCATGGTGTATGATGGGTTCAGGCCTGAAGATCTGAT
GGAAGCCTGTGTAGAACTCACAGTCTGGGACCATTATAAACTAACCAACCAGTTTCTGGGAGGTCTCCGG
ATCGGCTTTGGAACAGGAAAAAGCTACGGGACTGAAGTGGATTGGATGGATTCTACTTCTGAGGAAGTTG
CTCTCTGGGAGAAGATGGTAAACTCTCCCAACACTTGGGTTGAAGCGACGCTGCCCCTCCGGATGCTTCT
GATTGCCAAGCTTTCCAAGTGA

Translation (2153 aa):
MIDLSFLTEEEQDAILKVLQRDAALKRAEEERVRHLPEKIKDDQQLKNMSGQWFYEAKAKRHRDKIHGAD
IIRASMRRKKLPAAAEQNKDTAMRAKESWVNNVNKDAVLPPEIAVVEEPEDDTDPAGPSSSLVDPASSVI
DMSQESTRTPAVSLPKQRKNPFNSPKLPEDHSLQQTKPEQSKTGKAGLFQISKEGELSESKEKSSIPDMP
RQQLEKPKQTVSTEPENASHTKAPIPKARKLIYKSNDLEKDDNQSFPRQRRDSLNARGAPRGILKRNSSS
SSTDSETLRLNYNLDPKSKILSPGLTIHERISEKEFSLEDDSSTSSLEPLKHVRFSAVKNELPQSPRPVL
GQEVGEFTVLESDQLQNGTEDAGDIEEFQNHPELSHKTPLSHYQLVSSPSDSGREREQLMSSGSAPRDEI
PCHSDILPTGPQCVESSSVINGQQEKSSHFTKLPSELSKSPSDELTQCGEPEPSQTADHSFRDHRQGKPL
LKALTAQTSSHVGPCATEIRKTTDESISKVLDWFNRSSHTEDTMSSLQHLQGIDLKQQTDSKAQISNALM
TDNTCLEEDDSKVPMPTKVKLKPVRSDLAFQEEGAMLVSVTCQDSDALLKSNSENLSQQGTHKEGPDTLQ
RFETYRIPSRRNENKGGSQGLESTEGVGTLPADGDDLLRALKRSDSEAQVPWNTNHPESLGKEETEFHLP
QKSKGSTHINSDSSVIVLGSILKDDTERKSKTKKTSLLKSSLETENSALPLGAADNGSSWKKPEDQKEAS
EDPKNQVLREKYKRVSDRISFWEGGKAGAKLKASQLTSSCSQQLSAKAHQPRKSQVMSLGSLSSGQSDYS
EVTAKPVVFDEDGQAPHLSRFDSSNKPETTRPLMSGLSKNYAVGNQSDKVTQLQTMGNETHPSLEKDRLV
IDKSNGSFKVLSLRERMDEPNTEQVYSHSQFENLRKFWGLGANVNSKHNDGNNTATNKQTSVPLNIQKSK
EFNAMKLSREKTQEVEEGRHLRQGNVIAAEEMEKLNFKCMPQEPPDETIFPQKTLSIEPSKENEGKNTEY
FGTQVIKKACSEQEIQESIVKTSILPKVSKDTFNDRLQKLLAEATLPASQTSGKEVHEQQALKVGVSENG
KSFAKDEEEVTGLRESPKEPQRRNQQDCSVDKLLKESTRTPLSPLQSPLEAVTTRPISPLKDDLLFEKWM
KENHSPSADQREITAPFPQGVGILAGADLIQKDKHCNTEAMLQLAAEGSPPLAQLPHCFDGVSSSPADMS
LSWDAQLPSENGTLPSQKEISEAIEKVVLPSKPAATDVNAVLQKLLREAGEVDAKLPEREQTAGTPSCPQ
RVSPLWPAPDPVVPNKDFHSFCTVPDTTHEGRSHLSARMSPSAHATMSPTSTVTQYGQRLLQEVAETVRE
TVIQPKSQYPEFRAGLEKLLKETLQTSLSKDKKDTMTISPSALTGSCEMSHQLSSEFHLTEIQETVEKAE
APSVTESSFDVGLEKLLKEMSEGPCQLQASGRRDTLEKQPSQVEQAGFMGEIPHHILDGPGASKMKVSCS
GLESQISQCDKQLGGDEAVTGPLIDVQDNKSGFEVPECSQLHEDHKIETNGTIQFVEDKGREKVITGETQ
ASQEPGFEEAPKEMSVSRNKHSIVLLETKGKAIKTREVKLVLATPYKRQEEEQGPEACSEYEFSDGNTSS
NRENWRNTSSSEEEHSPVLKTLERRAARKLPSKSLEDIPSDSSNQAKVDNLPEELVRSAEDDQKADQEPD
TNECIPGISTVPSLPDNQFSHPDKLKRMSKSVPAFLQDESDDRETDTASESSYQLRRYKKSPSSLTNLSS
SSGMTSLSSASGSVMSVYSGDFGNLEVKGSVQFALDYVESLKELHVFVAQCKDLAAADVKKQRSDPYVKT
YLLPDKGKMGKKKTLVVKKTLNPVYNEILRYKIERQFLKTQKLNLSVWHRDTFKRNSFLGEVELDLETWD
WDSKQNKQLKWYPLKRKTAPVALETENRGEMKLALQYVPEPSPGKKLPTTGEVHIWVKECLDLPLLRGSH
LNSFVKCTILPDTSRKSRQKTRAVGKTTNPVFNHTMVYDGFRPEDLMEACVELTVWDHYKLTNQFLGGLR
IGFGTGKSYGTEVDWMDSTSEEVALWEKMVNSPNTWVEATLPLRMLLIAKLSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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