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Report for CCDS8708.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8708.1 Public Homo sapiens 12 INTS13 24 110 108 CCDS HistoryNCBI Gene:55726Re-query CCDS DB by CCDS ID:8708.1Re-query CCDS DB by GeneID:55726See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8708.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000261191.12 ENSP00000261191.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000261191.12Link to Ensembl Protein Viewer:ENSP00000261191.7Re-query CCDS DB by Nucleotide ID:ENST00000261191Re-query CCDS DB by Protein ID:ENSP00000261191
Original member Current member NCBI NM_018164.3 NP_060634.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018164.3Link to Protein Sequence:NP_060634.2Re-query CCDS DB by Nucleotide ID:NM_018164Re-query CCDS DB by Protein ID:NP_060634Link to BLAST:NP_060634.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060634.2 706 Q9NVM9-1 706 100% 0 0

Chromosomal Locations for CCDS 8708.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 26905497 26905536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 26906302 26906437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 26911178 26911317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 26913457 26913687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 26913974 26914128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 26914408 26914578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 26916002 26916180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 26917352 26917441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 26917644 26917733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 26922616 26922700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 26924355 26924483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 26925761 26925851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 26928205 26928285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 26928703 26928905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 26934556 26934630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 26936579 26936803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2121 nt):
ATGAAGATTTTTTCTGAATCTCATAAAACAGTGTTTGTTGTGGATCACTGCCCTTATATGGCAGAATCTT
GCAGGCAGCATGTCGAGTTTGATATGCTGGTGAAGAATAGAACCCAAGGAATCATTCCTTTGGCCCCCAT
ATCTAAATCATTGTGGACTTGCTCAGTAGAATCTTCCATGGAATATTGTAGAATAATGTATGATATATTT
CCTTTCAAAAAGCTGGTGAATTTTATTGTGAGTGACTCTGGAGCACATGTTTTAAATTCTTGGACTCAAG
AAGACCAAAATTTACAGGAGCTAATGGCAGCATTAGCCGCTGTTGGGCCTCCTAATCCTCGGGCAGATCC
AGAGTGCTGCAGTATTCTGCATGGCCTTGTTGCAGCAGTGGAAACTCTCTGCAAAATTACTGAATACCAA
CATGAGGCTCGTACTCTACTCATGGAGAATGCAGAACGTGTTGGAAATAGAGGACGAATAATCTGTATTA
CTAATGCAAAAAGTGATAGTCATGTGCGAATGCTTGAAGACTGTGTCCAGGAAACGATTCATGAACATAA
CAAGCTTGCTGCAAATTCAGATCATCTCATGCAGATTCAAAAATGTGAGTTGGTCTTGATCCACACCTAC
CCAGTTGGTGAAGACAGCCTTGTATCTGATCGTTCTAAAAAAGAGTTGTCCCCGGTTTTAACCAGTGAAG
TTCATAGTGTTCGTGCAGGACGGCATCTTGCTACCAAATTGAATATTTTAGTACAGCAACATTTTGACTT
GGCTTCAACTACTATTACAAATATTCCAATGAAGGAAGAACAGCATGCTAACACATCTGCCAATTATGAT
GTGGAGCTACTTCATCACAAAGATGCACATGTAGATTTCCTGAAAAGTGGTGATTCGCATCTAGGTGGCG
GCAGTCGAGAAGGCTCGTTTAAAGAAACAATAACATTAAAGTGGTGTACACCAAGGACAAATAACATTGA
ATTACACTATTGTACTGGAGCTTATCGGATTTCACCTGTAGATGTAAATAGTAGACCTTCCTCCTGCCTT
ACTAATTTTCTTCTAAATGGTCGTTCTGTTTTATTGGAACAACCACGAAAGTCAGGTTCTAAAGTCATTA
GTCATATGCTTAGTAGCCATGGAGGAGAGATTTTTTTGCACGTCCTTAGCAGTTCTCGATCCATTCTAGA
AGATCCACCTTCAATTAGTGAAGGATGTGGAGGAAGAGTTACAGACTACCGGATTACAGATTTTGGTGAA
TTTATGAGGGAAAACAGATTAACTCCTTTTCTAGACCCCAGATATAAAATCGATGGAAGTCTTGAGGTCC
CTTTGGAACGAGCAAAAGATCAGTTAGAAAAACATACCCGTTACTGGCCTATGATCATTTCACAAACCAC
CATTTTTAACATGCAAGCGGTAGTTCCATTAGCCAGTGTTATTGTGAAAGAATCTCTGACAGAAGAAGAT
GTGTTAAACTGTCAAAAAACAATATACAACTTAGTTGATATGGAAAGAAAAAATGATCCTCTACCTATTT
CCACAGTTGGTACAAGAGGAAAGGGCCCTAAAAGAGATGAACAATACCGTATCATGTGGAATGAATTAGA
AACCCTTGTCAGAGCCCATATCAACAACTCAGAGAAACATCAAAGAGTCTTGGAATGTCTGATGGCATGC
AGGAGCAAACCCCCAGAAGAGGAAGAACGAAAGAAACGAGGAAGAAAGAGGGAAGACAAAGAGGACAAGT
CAGAGAAAGCAGTGAAAGATTATGAACAGGAAAAGTCTTGGCAAGACTCAGAGAGATTAAAAGGAATCTT
AGAGCGTGGAAAAGAAGAATTGGCTGAAGCTGAGATTATAAAAGATTCGCCTGATTCCCCAGAACCTCCA
AACAAAAAACCCCTTGTTGAAATGGATGAAACTCCACAAGTGGAAAAATCAAAAGGGCCAGTGTCGTTAT
TATCCTTGTGGAGTAATAGAATCAATACTGCCAATTCCAGAAAACATCAGGAATTTGCTGGACGTTTGAA
CTCTGTTAATAACAGAGCTGAACTATATCAACATCTTAAAGAGGAAAATGGGATGGAGACAACAGAAAAT
GGAAAAGCCAGCCGGCAGTGA

Translation (706 aa):
MKIFSESHKTVFVVDHCPYMAESCRQHVEFDMLVKNRTQGIIPLAPISKSLWTCSVESSMEYCRIMYDIF
PFKKLVNFIVSDSGAHVLNSWTQEDQNLQELMAALAAVGPPNPRADPECCSILHGLVAAVETLCKITEYQ
HEARTLLMENAERVGNRGRIICITNAKSDSHVRMLEDCVQETIHEHNKLAANSDHLMQIQKCELVLIHTY
PVGEDSLVSDRSKKELSPVLTSEVHSVRAGRHLATKLNILVQQHFDLASTTITNIPMKEEQHANTSANYD
VELLHHKDAHVDFLKSGDSHLGGGSREGSFKETITLKWCTPRTNNIELHYCTGAYRISPVDVNSRPSSCL
TNFLLNGRSVLLEQPRKSGSKVISHMLSSHGGEIFLHVLSSSRSILEDPPSISEGCGGRVTDYRITDFGE
FMRENRLTPFLDPRYKIDGSLEVPLERAKDQLEKHTRYWPMIISQTTIFNMQAVVPLASVIVKESLTEED
VLNCQKTIYNLVDMERKNDPLPISTVGTRGKGPKRDEQYRIMWNELETLVRAHINNSEKHQRVLECLMAC
RSKPPEEEERKKRGRKREDKEDKSEKAVKDYEQEKSWQDSERLKGILERGKEELAEAEIIKDSPDSPEPP
NKKPLVEMDETPQVEKSKGPVSLLSLWSNRINTANSRKHQEFAGRLNSVNNRAELYQHLKEENGMETTEN
GKASRQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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