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Report for CCDS278.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
278.1 Public Homo sapiens 1 SH3BGRL3 24 110 108 CCDS HistoryNCBI Gene:83442Re-query CCDS DB by CCDS ID:278.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 278.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000270792.10 ENSP00000270792.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000270792.10Link to Ensembl Protein Viewer:ENSP00000270792.5Re-query CCDS DB by Nucleotide ID:ENST00000270792Re-query CCDS DB by Protein ID:ENSP00000270792
Original member Current member NCBI NM_031286.4 NP_112576.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_031286.4Link to Protein Sequence:NP_112576.1Re-query CCDS DB by Nucleotide ID:NM_031286Re-query CCDS DB by Protein ID:NP_112576Link to BLAST:NP_112576.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_112576.1 93 Q9H299 93 100% 0 0

Chromosomal Locations for CCDS 278.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 26280156 26280203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26280765 26280932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26281058 26281123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (282 nt):
ATGAGCGGCCTGCGCGTCTACAGCACGTCGGTCACCGGCTCCCGCGAAATCAAGTCCCAGCAGAGCGAGG
TGACCCGAATCCTGGATGGGAAGCGCATCCAATACCAGCTAGTGGACATCTCCCAGGACAACGCCCTGAG
GGATGAGATGCGAGCCTTGGCAGGCAACCCCAAGGCCACCCCACCCCAGATTGTCAACGGGGACCAGTAC
TGTGGGGACTATGAGCTCTTCGTGGAGGCTGTGGAACAAAACACGCTGCAGGAGTTCCTGAAGCTGGCTT
GA

Translation (93 aa):
MSGLRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRALAGNPKATPPQIVNGDQY
CGDYELFVEAVEQNTLQEFLKLA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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