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Report for CCDS28964.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28964.1 Public Mus musculus 17 Lbh 23 108 98 CCDS HistoryNCBI Gene:77889Re-query CCDS DB by CCDS ID:28964.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28964.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024857.13 ENSMUSP00000024857.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024857.13Link to Ensembl Protein Viewer:ENSMUSP00000024857.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000024857Re-query CCDS DB by Protein ID:ENSMUSP00000024857
Original member Current member NCBI NM_029999.4 NP_084275.3 Accepted alive Link to Nucleotide Sequence:NM_029999.4Link to Protein Sequence:NP_084275.3Re-query CCDS DB by Nucleotide ID:NM_029999Re-query CCDS DB by Protein ID:NP_084275Link to BLAST:NP_084275.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084275.3 105 Q9CX60 105 100% 0 0

Chromosomal Locations for CCDS 28964.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 72918553 72918578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 72921188 72921290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 72939256 72939444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (318 nt):
ATGTCTGTATATTTCCCCATTCACTGCTCTGACTATCTGAGATCGGCTGAGATGACCGAGGTGATGATGA
ACGCTCCATCCATGGAAGAGATTGGTCTCAGCCCCCGCAAGGATGGCCTTTCCTATCAGATCTTTCCGGA
CCCATCAGACTTTGACCGTTGCTGCAAGCTGAAGGACCGCCTGCCCTCCATAGTGGTGGAACCCACTGAA
GGGGAGGTGGAAAGCGGGGAGCTCCGGTGGCCTCCTGAGGAATTCCTGGTCCAGGAGGATGAGCAAGACA
ACTGTGAAGAGACAACAAATGAAAAGAAGGACCAGTAG

Translation (105 aa):
MSVYFPIHCSDYLRSAEMTEVMMNAPSMEEIGLSPRKDGLSYQIFPDPSDFDRCCKLKDRLPSIVVEPTE
GEVESGELRWPPEEFLVQEDEQDNCEETTNEKKDQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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