CCDS Report for Consensus CDS

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Report for CCDS36665.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
36665.1	Public	Mus musculus	13	Secisbp2	23	108	98

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36665.1

Original	Current	Source	Nucleotide ID	Protein ID	Status in CCDS	Seq. Status	Links
		EBI	ENSMUST00000040117.14	ENSMUSP00000045740.8	Accepted	alive
		NCBI	NM_029279.2	NP_083555.1	Accepted	alive

RefSeq	Length	Related UniProtKB/SwissProt	Length	Identity	Gaps	Mismatches
NP_083555.1	858	Q3U1C4	858	100%	0	0

Chromosomal Locations for CCDS 36665.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)

Genome Browser links:

Chromosome	Start	Stop
13	51651785	51651820
13	51652607	51652755
13	51654386	51654635
13	51655099	51655240
13	51656881	51657110
13	51662621	51662699
13	51665272	51665474
13	51670807	51670929
13	51673070	51673159
13	51673888	51674029
13	51676287	51676453
13	51677141	51677279
13	51678834	51678990
13	51679733	51679953
13	51682000	51682154
13	51682444	51682633
13	51683278	51683381

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2577 nt):
ATGGCGTCGGAGCGGCCGCGGGAGCCGGACGGCGAGGATAGCATCAAGTTGTCAGCTGATGTCAAACCAT TCGTCCCTAAGTTTGCTGGGCTCAACGTGGCGTGGTCAGAGTCCTCAGAGACACGTGTCTTCCCAGGCTG TGCGGCCACCTACTATCCATTTGTACAGGAACCACCAGCAGCTGAACAGAAAATGTATCCCGAAGACATG GCTTTCGGAGCCCCCACCTTTCCAGCACAGTACGTGTCTTCTGAGATAGCGCTGCATCCTTTTGCCTATC CCACTTACACCCTAGAGTCCGCACAGAGTGTTTGCTCAGTGCCAACCCTGCAGTACGACTACAGCCAAGC ACGGTGTCACCCAGGCTTTCGGACAGCAAAGCCCCGGCATGAGCACGTGTGCCCTCCACCTCAGGAAGCA AAAGGTGTATTTAAGAAAAAACCCTCTGATGAGAGAAGAGCATGTGAAGAGCAAAAGTCAAGCAGCAGAA GGGCTGACAATGCGGTGCCCTGTGAGGCGAGACCAGCCAGGGGGTCCAGTCACCTGTCCTCTCGAACTGA GAGCAGTTTGAAATCTGATGGTTACCACAAGCGACCCGACCGCAAGTCCAGAATCCTTGCGAAGAGTGCA TCTACCTCTAAACCTGAATTTGAGTTTAGTAGGTTAGACTTTCCTGAACTGCAGAGTCCAAAGAACAGTA ACATGCCAGAGACACAGAAGCCGCCCAGGTGGGGGCCTCTTGGCCCTGCTGCCAGTAACATGCCTCTCCT AGGAGACGTCGGCAAGCCCGTCGCAGATATGGTAGAGGGCAAAATGGTGAAGAGCGATCACACTGATGGA GCTGTGACCAGTAATGCCACTACCAGTTCCCCTTCATGTACCCAAGAGTTGTCTTGGACACCAATGGGTT ATATTGTTCGGCAGACAGTGTCTTCAGATTCAGCAGCAGCCACTGAAAATGTGACTTCCATGATAAACCT AAAGAAGACTACTTCATCAGCTGATGCTAAAAATGTTAGTGTGACATCTGAGGCTTTATCTTCAAATCCT TCCTACAACAGAGAAAAGCGTGTTTATCCTGCTCCAAAGGCCAAAGCATCACAAGGAGGTGAACTTGAAC AAAACGAAAGCTCCAAAAAGAATAAGAAAAAGAAAGAGAAGTCTAAACCGAGTTATGAAGTCCTGACGGT TCAGGAGCCGCCAAGGATTGAAGATGCAGAGGAATTCCCCAACCTGTCAGTTGCGTCGGAAAGAAGACAC AGAGGGCAATCACCGAAGCTTCACAGTAAACAGCAGACGCAGAATGAATTTAAAACAAGTGGGAAGAAGA GCCAGGTCCCAGTGCAGCTGGACCTGGGGGGCATGCTGGCCGCGCTGGAGAAGCAGCAGCAGCAGCAGCA CGCCTCGCACGCCAAGCCATCCTCCAGACCCGTCGTGTTCTCAGTTGGAGCAGTGCCAGTCCTGTCCAAG GATGCCTCCTCCAGTGAGAGGGGACGCCGCTCCAGTCAGATGAAGACCCCACACAACCCCCTGGACTCCA GTGCCCCCCTGATGAAGAAGGGGAAGCAGAGGGAGATACCTAAGGCCAAGAAGCCCACCTCACTGAAGAA GATAATTTTGAAAGAACGGCAAGAGAGGATGCAGCAGCGACTCCAAGAAAGTGCTGTGAGCCTGACGGTG GCCAGTGATGACTCACAGGATGTGGAGAGTGGCGCCAGTAACCAAACCCCCAGTCAGGACAACCCCACAG GTCCAGAGAAGACAGAAGAATCAGTGTCTTCTACACCTGTGGTTGAGGGTGAGTCAGAGGAGCCAGCTGG CACAGAGTTCCAGAGGGACCCAGAGGCTTGCCAGCCTGCCCCTGACAGTGCCACCTTCCCCAAGATCCAC AGCCGGAGGTTCCGGGACTACTGCAGCCAGATGCTTAGTAAAGAAGTAGATGCTTGTGTCACGGGTCTGC TCAAGGAGCTGGTGCGCTTCCAAGACCGCATGTACCAGAAGGATCCCGTCAAGGCCAAGACAAAACGGCG GCTCGTGCTGGGGCTGAGGGAGGTCCTGAAACACCTGAAGCTCAGGAAGCTGAAGTGCATCATCATCTCT CCCAACTGTGAGAAGACCCAGTCTAAAGGTGGGCTGGACGACACGCTGCACACCATCATCGACTGCGCCT GCGAGCAGAACATCCCCTTCGTGTTTGCACTCAATCGCAAGGCTCTGGGGCGGAGCCTGAATAAAGCTGT TCCTGTCAGCATTGTAGGGATCTTCAGCTACGATGGGGCCCAGGACCAGTTCCACAAGATGGTTGAGCTG ACCATGGCAGCCCGTCAGGCATACAAGACCATGTTGGAGACAATGCGGCAGGAACAGGCAGGAGAACCTG GACCTCAGTCCCCTCCCAGCCCACCCATGCAAGACCCCATCCCATCCACGGAAGAAGGCACCCTCCCTTC CACTGGAGAAGAGCCACACTACATTGAGATTTGGAAAAAGCACCTGGAAGCGTACAGTCAGCGTGCCCTG GAGCTGGAAGACTCACTGGAGGCGTCAACCTCTCAGATGATGAACTTGAATTTATAA
Translation (858 aa):
MASERPREPDGEDSIKLSADVKPFVPKFAGLNVAWSESSETRVFPGCAATYYPFVQEPPAAEQKMYPEDM AFGAPTFPAQYVSSEIALHPFAYPTYTLESAQSVCSVPTLQYDYSQARCHPGFRTAKPRHEHVCPPPQEA KGVFKKKPSDERRACEEQKSSSRRADNAVPCEARPARGSSHLSSRTESSLKSDGYHKRPDRKSRILAKSA STSKPEFEFSRLDFPELQSPKNSNMPETQKPPRWGPLGPAASNMPLLGDVGKPVADMVEGKMVKSDHTDG AVTSNATTSSPSCTQELSWTPMGYIVRQTVSSDSAAATENVTSMINLKKTTSSADAKNVSVTSEALSSNP SYNREKRVYPAPKAKASQGGELEQNESSKKNKKKKEKSKPSYEVLTVQEPPRIEDAEEFPNLSVASERRH RGQSPKLHSKQQTQNEFKTSGKKSQVPVQLDLGGMLAALEKQQQQQHASHAKPSSRPVVFSVGAVPVLSK DASSSERGRRSSQMKTPHNPLDSSAPLMKKGKQREIPKAKKPTSLKKIILKERQERMQQRLQESAVSLTV ASDDSQDVESGASNQTPSQDNPTGPEKTEESVSSTPVVEGESEEPAGTEFQRDPEACQPAPDSATFPKIH SRRFRDYCSQMLSKEVDACVTGLLKELVRFQDRMYQKDPVKAKTKRRLVLGLREVLKHLKLRKLKCIIIS PNCEKTQSKGGLDDTLHTIIDCACEQNIPFVFALNRKALGRSLNKAVPVSIVGIFSYDGAQDQFHKMVEL TMAARQAYKTMLETMRQEQAGEPGPQSPPSPPMQDPIPSTEEGTLPSTGEEPHYIEIWKKHLEAYSQRAL ELEDSLEASTSQMMNLNL

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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