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Report for CCDS15145.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15145.1 Public Mus musculus 1 Spp2 23 108 98 CCDS HistoryNCBI Gene:75396Re-query CCDS DB by CCDS ID:15145.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15145.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027518.11 ENSMUSP00000027518.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027518.11Link to Ensembl Protein Viewer:ENSMUSP00000027518.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000027518Re-query CCDS DB by Protein ID:ENSMUSP00000027518
Original member Current member NCBI NM_029269.3 NP_083545.1 Accepted alive Link to Nucleotide Sequence:NM_029269.3Link to Protein Sequence:NP_083545.1Re-query CCDS DB by Nucleotide ID:NM_029269Re-query CCDS DB by Protein ID:NP_083545Link to BLAST:NP_083545.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083545.1 203 Q8K1I3 203 100% 0 0

Chromosomal Locations for CCDS 15145.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 88407150 88407216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 88407317 88407441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 88411109 88411228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 88412251 88412358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 88417238 88417292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 88418387 88418437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 88420583 88420668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (612 nt):
ATGGAGCAGGCAATGCTGAAGACGCTGGCTTTGTTGGTGCTGGGCATGCACTACTGGTGTGCCACAGGTT
TCCCGGTGTACGACTACGACCCTTCCTCTCTGCAGGAAGCTCTCAGTGCCTCAGTGGCAAAGGTGAACTC
GCAGTCCCTGAGTCCTTACCTGTTTCGGGCGACCCGGAGCTCCTTGAAGAGAGTCAACGTCCTGGATGAA
GACACATTGGTCATGAACTTAGAGTTCAGTGTTCAGGAAACCACATGCCTGAGAGATTCTGGTGATCCCT
CCACCTGTGCCTTCCAAAGGGGCTACTCTGTGCCAACAGCTGCTTGCAGGAGCACTGTGCAGATGTCCAA
GGGACAGGTAAAGGATGTGTGGGCTCACTGCCGCTGGGCGTCCTCATCTGAGTCCAACAGCAGTGAGGAG
ATGATGTTTGGGGACATGGCAAGATCCCACAGACGAAGAAATGATTATCTACTTGGTTTTCTTTCTGATG
AATCCAGAAGTGAACAATTCCGTGACCGGTCACTTGAAATCATGAGGAGGGGACAGCCTCCCGCCCATAG
AAGGTTCCTGAACCTCCATCGCAGAGCAAGAGTAAATTCTGGCTTTGAGTGA

Translation (203 aa):
MEQAMLKTLALLVLGMHYWCATGFPVYDYDPSSLQEALSASVAKVNSQSLSPYLFRATRSSLKRVNVLDE
DTLVMNLEFSVQETTCLRDSGDPSTCAFQRGYSVPTAACRSTVQMSKGQVKDVWAHCRWASSSESNSSEE
MMFGDMARSHRRRNDYLLGFLSDESRSEQFRDRSLEIMRRGQPPAHRRFLNLHRRARVNSGFE


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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