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Report for CCDS48689.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48689.1 Public Mus musculus 10 Bbs10 23 108 98 CCDS HistoryNCBI Gene:71769Re-query CCDS DB by CCDS ID:48689.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48689.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040454.4 ENSMUSP00000049387.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040454.4Link to Ensembl Protein Viewer:ENSMUSP00000049387.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000040454Re-query CCDS DB by Protein ID:ENSMUSP00000049387
Original member Current member NCBI NM_027914.1 NP_082190.1 Accepted alive Link to Nucleotide Sequence:NM_027914.1Link to Protein Sequence:NP_082190.1Re-query CCDS DB by Nucleotide ID:NM_027914Re-query CCDS DB by Protein ID:NP_082190Link to BLAST:NP_082190.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082190.1 713 Q9DBI2 713 100% 0 0

Chromosomal Locations for CCDS 48689.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 111298723 111298907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 111299213 111301169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2142 nt):
ATGGCGTCCCAGGGGTCGGTGACGGCGGCTTTGCGGGTGGCCGAGGTGCTGGAGAGCATCGCGAACCGCT
GCGTGGGGCCCGAGGGCGGCCAAGTGTTGTGTACGAAGCCCACCGGCGAGGTGCTGCTTAGCAGGGATGG
AGGCTGCCTCCTGGAGGCGCTGCACTTAGAGCATCCCTTAGCCAGGATGATAGTGGCGTGTGTTTCCAGT
CACCTTAAAAAGACAGGAGATGGTGCTAAGACATTTATTATTTTTCTTTGCCATTTACTCAGAGGACTTC
ATGCAATCGGAGAAAAAGGAAAAGATTCATTCACTTCTGAAAATATTCAGAGCCATGAAAGGCATTGGAA
AAACTGTTGTCAGTGGAAATCTATTTCCCAGGCTCTGCAAACGTTTCAGACACAAACCCTAGGTTGTATT
GTAGACCGGAGTTTAAGCAGGCACTACCTGTCTGTCTTTTCTTCATCCACTGAAGGAAGAAAACTGTGCA
GGCACTCGCTAGAGTTGCTCCTGGAAGCATACTTTTGTGGAAGAGTGGGAAGAAACAATCACAGATTCAT
TTCACAGTTGATGTGTGACTACGTTTTCAAGTGTATGGCTTGTGAAAGTGGGGTTGAAGTATTTGAGTTG
TTGGATCACTGTTTTGCAGAGTTGAATGTTGGCGTGACAGGCCTTCCTGTTTCAGATTCTAGAATCATAG
ATGGCCTTGTGCTTCCCAGGGACTTTTCTATGTACTGCCCAGCAGATGGTGACATTAGGATGGTGATAGT
AACAGAAATCCTCCAGCCTCAGTTTTCATCGGCTGGCTCGGAGTTTGTTCTCAATTCAGAAACACAGTTT
CAGGCATCTCAGTGCTGGATCACGGACAGGACAAAAACAGTAATGAACCACTTGCGTGGTCAGAATGTAA
AACTGCTCCTGACCAGTGTGAAGCAACCAGACCTGGTTATTTACTGTGCAAGACTTAATAGCATATCAGT
GGTGGAGTGTTTATCAGCCGAAGAAGTTTCCCTTGTCCAGAGGATCACTGGTCTTTCTCCTTGTGTCCTA
CCAGAGGTTGCTTCACAGTGTGAAATTTCTGATAGTACTTTGGTGAAGTTTTGCAAGCCCCTCATCCTTA
GATCCAAGAGGTATGTTCATCTCGGCTTGATTAGCACATGTGCATTTATACCTCACTCTATGGTCCTCTG
TGGACCGGTTCTGGGTCTTGTTGAACAGCATGAGAGAGCTTTTCACGGAGCATTTAAGATGCTTCGGCAG
CTATTTACTGACCTTGATCTAAATTACATCATACAAACCAAACAGCAATGTAACCCAAGTCCTCTTGCTT
ATGACAATAGCAGAGAGCGTAATCACTCACCAGAAACTGATAAGTATCAGGACATAGTAGCAAAGAGCAA
AAATAAATTGGAAACTCAAACACATTTAGAAGTATATTCAGGTTTGGGGGCTTCAGATACAGAATTGAGA
GCAGGTAAGCCGTGGTCAGCACACAAGAAGACACCAATAGCTCCATCCCAAACAGATGAAATGCTGAAGT
GCTTGCCTCCAGAAAGAAGCGGGATAATTGATAACTGTGACCTGTCAATTGAGAATCATTCCACTGGAAA
TCCTACAGCAGAAGACACTGGAACAGAAATTTCTTTCGAACACTTACAGGTCTCAGATAATGCCGGAAAG
GGTTACACGCTGCCAGTGATGCGCAAGTCACTAGATACCTGTACTTGTCAGGGTTATTGTTCATCCACTG
TGCCAGCAGGCTGTGTGCTGCCAGTGGGTGGAAGTTTTGAGATTTTGATGAGTTACTACCTTCTCAGCTA
TGCCAAACAATGCCGACAATCAGATGAAACTGTCATCAGTATGTTAATAGCTGATGCTCTTCTAGGCATC
CCTAAAATCCTTTATAAGCCTAAGAAGGGAAAGGACAGTTTCCCACACATATACATGCGGTCTCTCCATG
CACTGCAAGCCAGTCAACCCATGGTAAGTGGTCAATCAGGGTTCGAGTCAGTAGCTGGTAAGTACCAATT
ACTAACTTCAGTTCTTCAGTGTTTGATGAAAATATTAACCATTGATTTAATAATCAACATCAAGAGGCAA
CCTCAGAAAACTGCTGACCAAGAATCAGAAGACGAATTTTAA

Translation (713 aa):
MASQGSVTAALRVAEVLESIANRCVGPEGGQVLCTKPTGEVLLSRDGGCLLEALHLEHPLARMIVACVSS
HLKKTGDGAKTFIIFLCHLLRGLHAIGEKGKDSFTSENIQSHERHWKNCCQWKSISQALQTFQTQTLGCI
VDRSLSRHYLSVFSSSTEGRKLCRHSLELLLEAYFCGRVGRNNHRFISQLMCDYVFKCMACESGVEVFEL
LDHCFAELNVGVTGLPVSDSRIIDGLVLPRDFSMYCPADGDIRMVIVTEILQPQFSSAGSEFVLNSETQF
QASQCWITDRTKTVMNHLRGQNVKLLLTSVKQPDLVIYCARLNSISVVECLSAEEVSLVQRITGLSPCVL
PEVASQCEISDSTLVKFCKPLILRSKRYVHLGLISTCAFIPHSMVLCGPVLGLVEQHERAFHGAFKMLRQ
LFTDLDLNYIIQTKQQCNPSPLAYDNSRERNHSPETDKYQDIVAKSKNKLETQTHLEVYSGLGASDTELR
AGKPWSAHKKTPIAPSQTDEMLKCLPPERSGIIDNCDLSIENHSTGNPTAEDTGTEISFEHLQVSDNAGK
GYTLPVMRKSLDTCTCQGYCSSTVPAGCVLPVGGSFEILMSYYLLSYAKQCRQSDETVISMLIADALLGI
PKILYKPKKGKDSFPHIYMRSLHALQASQPMVSGQSGFESVAGKYQLLTSVLQCLMKILTIDLIINIKRQ
PQKTADQESEDEF


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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