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Report for CCDS33661.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33661.1 Public Homo sapiens 22 TSPO 24 110 108 CCDS HistoryNCBI Gene:706Re-query CCDS DB by CCDS ID:33661.1See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33661.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000329563.8 ENSP00000328973.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000329563.8Link to Ensembl Protein Viewer:ENSP00000328973.4Re-query CCDS DB by Nucleotide ID:ENST00000329563Re-query CCDS DB by Protein ID:ENSP00000328973
Original member Current member EBI ENST00000337554.8 ENSP00000338004.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000337554.8Link to Ensembl Protein Viewer:ENSP00000338004.3Re-query CCDS DB by Nucleotide ID:ENST00000337554Re-query CCDS DB by Protein ID:ENSP00000338004
Original member Current member EBI ENST00000396265.4 ENSP00000379563.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396265.4Link to Ensembl Protein Viewer:ENSP00000379563.4Re-query CCDS DB by Nucleotide ID:ENST00000396265Re-query CCDS DB by Protein ID:ENSP00000379563
Original member Current member NCBI NM_000714.6 NP_000705.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000714.6Link to Protein Sequence:NP_000705.2Re-query CCDS DB by Nucleotide ID:NM_000714Re-query CCDS DB by Protein ID:NP_000705Link to BLAST:NP_000705.2
Original member Current member NCBI NM_001256530.1 NP_001243459.1 Accepted alive Link to Nucleotide Sequence:NM_001256530.1Link to Protein Sequence:NP_001243459.1Re-query CCDS DB by Nucleotide ID:NM_001256530Re-query CCDS DB by Protein ID:NP_001243459Link to BLAST:NP_001243459.1
Original member Current member NCBI NM_001256531.1 NP_001243460.1 Accepted alive Link to Nucleotide Sequence:NM_001256531.1Link to Protein Sequence:NP_001243460.1Re-query CCDS DB by Nucleotide ID:NM_001256531Re-query CCDS DB by Protein ID:NP_001243460Link to BLAST:NP_001243460.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000705.2 169 P30536-1 169 100% 0 0
NP_001243459.1 169 P30536-1 169 100% 0 0
NP_001243460.1 169 P30536-1 169 100% 0 0

Chromosomal Locations for CCDS 33661.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 43159239 43159420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 43161052 43161190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 43162803 43162991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (510 nt):
ATGGCCCCGCCCTGGGTGCCCGCCATGGGCTTCACGCTGGCGCCCAGCCTGGGGTGCTTCGTGGGCTCCC
GCTTTGTCCACGGCGAGGGTCTCCGCTGGTACGCCGGCCTGCAGAAGCCCTCGTGGCACCCGCCCCACTG
GGTGCTGGGCCCTGTCTGGGGCACGCTCTACTCAGCCATGGGGTACGGCTCCTACCTGGTCTGGAAAGAG
CTGGGAGGCTTCACAGAGAAGGCTGTGGTTCCCCTGGGCCTCTACACTGGGCAGCTGGCCCTGAACTGGG
CATGGCCCCCCATCTTCTTTGGTGCCCGACAAATGGGCTGGGCCTTGGTGGATCTCCTGCTGGTCAGTGG
GGCGGCGGCAGCCACTACCGTGGCCTGGTACCAGGTGAGCCCGCTGGCCGCCCGCCTGCTCTACCCCTAC
CTGGCCTGGCTGGCCTTCACGACCACACTCAACTACTGCGTATGGCGGGACAACCATGGCTGGCGTGGGG
GACGGCGGCTGCCAGAGTGA

Translation (169 aa):
MAPPWVPAMGFTLAPSLGCFVGSRFVHGEGLRWYAGLQKPSWHPPHWVLGPVWGTLYSAMGYGSYLVWKE
LGGFTEKAVVPLGLYTGQLALNWAWPPIFFGARQMGWALVDLLLVSGAAAATTVAWYQVSPLAARLLYPY
LAWLAFTTTLNYCVWRDNHGWRGGRRLPE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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