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Report for CCDS21084.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21084.1 Public Mus musculus 7 Polr2i 23 108 98 CCDS HistoryNCBI Gene:69920Re-query CCDS DB by CCDS ID:21084.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 21084.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019882.15 ENSMUSP00000019882.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019882.15Link to Ensembl Protein Viewer:ENSMUSP00000019882.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000019882Re-query CCDS DB by Protein ID:ENSMUSP00000019882
Original member Current member NCBI NM_027259.1 NP_081535.1 Accepted alive Link to Nucleotide Sequence:NM_027259.1Link to Protein Sequence:NP_081535.1Re-query CCDS DB by Nucleotide ID:NM_027259Re-query CCDS DB by Protein ID:NP_081535Link to BLAST:NP_081535.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081535.1 125 P60898 125 100% 0 0

Chromosomal Locations for CCDS 21084.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 30232346 30232404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30232482 30232536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30232750 30232823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30232907 30232981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30233067 30233118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30233285 30233347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (378 nt):
ATGGAACCCGACGGGACGTACGAGCCTGGCTTCGTGGGTATTCGGTTCTGCCAGGAATGTAATAACATGC
TGTACCCCAAGGAGGACAAGGAAAATCGCATTCTGCTGTACGCGTGCCGGAATTGCGATTACCAGCAGGA
AGCCGACAACAGCTGCATCTACGTCAACAAAATCACGCACGAAGTGGACGAGCTGACCCAGATCATCGCA
GACGTGTCCCAGGACCCCACGTTGCCCCGGACGGAGGACCACCCGTGCCAGAAGTGTGGCCACAAGGAGG
CAGTGTTCTTTCAGTCACACAGTGCCCGAGCTGAGGACGCCATGCGCCTGTACTATGTTTGCACTGCCCC
ACACTGCGGCCACCGCTGGACTGAGTGA

Translation (125 aa):
MEPDGTYEPGFVGIRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIA
DVSQDPTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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