NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS39112.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39112.1 Public Mus musculus 5 Usp46 23 108 98 CCDS HistoryNCBI Gene:69727Re-query CCDS DB by CCDS ID:39112.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39112.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000068058.13 ENSMUSP00000070554.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000068058.13Link to Ensembl Protein Viewer:ENSMUSP00000070554.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000068058Re-query CCDS DB by Protein ID:ENSMUSP00000070554
Original member NCBI NM_177561.3 NP_808229.1 Updated not alive Link to Nucleotide Sequence:NM_177561.3Link to Protein Sequence:NP_808229.1Re-query CCDS DB by Nucleotide ID:NM_177561Re-query CCDS DB by Protein ID:NP_808229
Current member NCBI NM_177561.4 NP_808229.1 Accepted alive Link to Nucleotide Sequence:NM_177561.4Link to Protein Sequence:NP_808229.1Re-query CCDS DB by Nucleotide ID:NM_177561Re-query CCDS DB by Protein ID:NP_808229Link to BLAST:NP_808229.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808229.1 366 P62069 366 100% 0 0

Chromosomal Locations for CCDS 39112.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 74002036 74002137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74002685 74002763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74003155 74003352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74005824 74005907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74016660 74016736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74029141 74029370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74032304 74032517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74037033 74037113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74068250 74068285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1101 nt):
ATGACTGTCCGAAACATCGCCTCCATCTGTAATATGGGCACCAATGCCTCTGCTCTGGAAAAAGACATTG
GACCAGAGCAGTTTCCGATCAATGAACACTACTTCGGATTGGTCAATTTTGGAAACACATGCTACTGTAA
CTCCGTGCTTCAAGCGCTGTACTTCTGCCGGCCGTTCCGGGAGAATGTGTTGGCATACAAGGCCCAGCAA
AAAAAGAAGGAAAACCTGTTGACATGCCTGGCAGACCTTTTCCACAGCATTGCCACGCAGAAGAAGAAGG
TTGGCGTCATCCCACCAAAGAAGTTCATTTCAAGGCTGAGGAAAGAGAACGATCTCTTTGATAACTACAT
GCAGCAGGATGCTCACGAGTTCTTAAATTATTTGCTAAACACTATTGCGGACATCCTGCAGGAAGAGAAG
AAACAGGAAAAACAAAACGGGAAGTTAAAAAACGGCAACATGAACGAACCAGCCGAGAACAATAAGCCAG
AACTCACCTGGGTCCACGAGATTTTTCAGGGAACACTCACTAACGAAACTCGATGCTTGAACTGTGAAAC
TGTGAGTAGCAAAGATGAAGATTTTCTTGACCTCTCTGTCGATGTGGAACAGAACACCTCCATCACCCAC
TGTCTGAGAGACTTCAGCAACACAGAAACGCTGTGTAGTGAACAAAAATATTATTGTGAAACATGTTGCA
GCAAACAGGAGGCTCAGAAGAGGATGAGGGTAAAAAAGCTGCCCATGATTTTGGCCCTGCACCTCAAGAG
GTTCAAGTACATGGAACAGCTCCACAGGTACACCAAGCTGTCTTACCGGGTGGTCTTCCCTCTGGAACTC
CGGCTCTTCAACACCTCCAGCGATGCTGTGAACCTGGACCGCATGTATGACCTGGTTGCTGTGGTCGTTC
ACTGTGGAAGTGGTCCTAACCGTGGGCATTACATCACCATCGTAAAAAGTCATGGCTTCTGGCTGTTGTT
TGATGACGACATTGTAGAGAAAATAGACGCTCAAGCCATTGAGGAATTCTATGGTCTAACGTCAGATATA
TCAAAAAATTCAGAATCTGGATATATTTTATTCTATCAATCAAGAGAATAA

Translation (366 aa):
MTVRNIASICNMGTNASALEKDIGPEQFPINEHYFGLVNFGNTCYCNSVLQALYFCRPFRENVLAYKAQQ
KKKENLLTCLADLFHSIATQKKKVGVIPPKKFISRLRKENDLFDNYMQQDAHEFLNYLLNTIADILQEEK
KQEKQNGKLKNGNMNEPAENNKPELTWVHEIFQGTLTNETRCLNCETVSSKDEDFLDLSVDVEQNTSITH
CLRDFSNTETLCSEQKYYCETCCSKQEAQKRMRVKKLPMILALHLKRFKYMEQLHRYTKLSYRVVFPLEL
RLFNTSSDAVNLDRMYDLVAVVVHCGSGPNRGHYITIVKSHGFWLLFDDDIVEKIDAQAIEEFYGLTSDI
SKNSESGYILFYQSRE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH