NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS23258.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23258.1 Public Mus musculus 9 Larp6 23 108 98 CCDS HistoryNCBI Gene:67557Re-query CCDS DB by CCDS ID:23258.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 23258.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038407.5 ENSMUSP00000040309.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038407.5Link to Ensembl Protein Viewer:ENSMUSP00000040309.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000038407Re-query CCDS DB by Protein ID:ENSMUSP00000040309
Original member Current member NCBI NM_026235.4 NP_080511.2 Accepted alive Link to Nucleotide Sequence:NM_026235.4Link to Protein Sequence:NP_080511.2Re-query CCDS DB by Nucleotide ID:NM_026235Re-query CCDS DB by Protein ID:NP_080511Link to BLAST:NP_080511.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080511.2 492 Q8BN59 492 100% 0 0

Chromosomal Locations for CCDS 23258.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 60713206 60713405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60724147 60724357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60736990 60738057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1479 nt):
ATGGCCCAGCTCGGCGAACAGACTCTGCCTGGGCCCGAGACCACGGTGCAGATCCGTGTCGCCATCCAGG
AGGCTGAGGATCTGGAGGATCTGGAGGAGGAGGACGAGGGGACCTCGGCGCGGGCAGCGGGGGACCCAGC
CCGGTACCTCAGTCCCGGCTGGGGCAGCGCCAGCGAGGAGGAGCCGAGCCGCGGGCACAGTAGTGCCACG
ACAAGTGGGGGCGAGAACGATCGCGAGGACCTGGAGCCTGAGTGGAGGCCCCCGGACGAGGAGCTCATCA
GGAAGCTGGTGGATCAGATTGAGTTCTACTTTTCGGACGAGAACCTGGAGAAGGACGCCTTCCTGCTGAA
GCACGTGCGGAGGAACAAGCTGGGCTACGTGAGCGTCAAGCTGCTCACCTCCTTCAAGAAGGTGAAACAC
CTCACCCGGGACTGGAGGACCACAGCACACGCCTTGAAGTATTCAGTCACCCTGGAGTTGAACGAGGACC
ACCGGAAGGTTAGGAGGACCACCCCTGTGCCACTGTTCCCCAATGAGAACCTCCCCAGCAAGATGCTGCT
GGTCTATGACCTACACCTGTCCCCTAAGCTCTGGGCCCTGGCCACACCCCAGAAGAACGGAAGGGTGCAG
GAGAAGGTGATGGAGCATCTGCTCAAGCTCTTTGGGACTTTTGGCGTCATCTCATCGGTGCGGATCCTAA
AACCTGGGAGAGAGCTGCCCCCTGACATCCGGAGGATCAGCAGCCGCTACAGCCAGGTGGGGACCCAAGA
GTGCGCCATTGTGGAGTTCGAGGAGGTGGACGCGGCCATTAAAGCCCATGAATTCATGGTCACTGAATCT
CAGAGCAAAGAGAACATGAAGGCTGTTCTGATTGGGATGAAGCCGCCCAAAAAGAAACCCCTCAAAGATA
AGAACCATGACGATGAGGCCACAGCAGGTACCCACCTAAGCAGATCCCTGAACAAGAGAGTGGAGGAACT
TCAGTACATGGGGGATGAGTCTTCCGCCAACAGCTCCTCTGACCCTGAGAGCAATCCCACCTCTCCCATG
GCCGGCCGGCGGCACGCGGCCAGCAACAAGCTCAGCCCTTCGGGCCACCAGAATATTTTTCTGAGCCCCA
ATGCCTCCCCGTGCTCAAGCCCATGGAGCAGCCCCTTGGCACAGCGCAAGGGTGTCTCCAGAAAATCCCC
GCTGGCTGAAGAAGGTAGACTGAACTTCAGCACCAGCCCTGAGATCTTCCGAAAGTGCATGGATTATTCT
TCCGACAGCAGCATCACTCCCTCGGGCAGCCCCTGGGTTCGCAGACGACGCCAGGCTGAGATGGGGACTC
AGGAGAAAAGTCCAGGGGCGAGTCCCCTGCTGTCTCGGAGGATGCAGACCGCAGATGGGTTACCTGTGGG
GGTGCTGAGGCTGCCCAGAGGCCCCGACAACACCAGGGGCTTCCACGGTGGACATGAGAGAGGCAGAGCC
TGTGTATAA

Translation (492 aa):
MAQLGEQTLPGPETTVQIRVAIQEAEDLEDLEEEDEGTSARAAGDPARYLSPGWGSASEEEPSRGHSSAT
TSGGENDREDLEPEWRPPDEELIRKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVKH
LTRDWRTTAHALKYSVTLELNEDHRKVRRTTPVPLFPNENLPSKMLLVYDLHLSPKLWALATPQKNGRVQ
EKVMEHLLKLFGTFGVISSVRILKPGRELPPDIRRISSRYSQVGTQECAIVEFEEVDAAIKAHEFMVTES
QSKENMKAVLIGMKPPKKKPLKDKNHDDEATAGTHLSRSLNKRVEELQYMGDESSANSSSDPESNPTSPM
AGRRHAASNKLSPSGHQNIFLSPNASPCSSPWSSPLAQRKGVSRKSPLAEEGRLNFSTSPEIFRKCMDYS
SDSSITPSGSPWVRRRRQAEMGTQEKSPGASPLLSRRMQTADGLPVGVLRLPRGPDNTRGFHGGHERGRA
CV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH