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Report for CCDS19519.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19519.1 Public Mus musculus 5 Tmed11 23 108 98 CCDS HistoryNCBI Gene:67366Re-query CCDS DB by CCDS ID:19519.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19519.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000004943.1 ENSMUSP00000004943.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000004943.1Link to Ensembl Protein Viewer:ENSMUSP00000004943.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000004943Re-query CCDS DB by Protein ID:ENSMUSP00000004943
Original member Current member NCBI NM_026109.2 NP_080385.2 Accepted alive Link to Nucleotide Sequence:NM_026109.2Link to Protein Sequence:NP_080385.2Re-query CCDS DB by Nucleotide ID:NM_026109Re-query CCDS DB by Protein ID:NP_080385Link to BLAST:NP_080385.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080385.2 215 Q9D2R4 215 100% 0 0

Chromosomal Locations for CCDS 19519.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 108777297 108777446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108778907 108779053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108779816 108779941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108786104 108786204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108795187 108795310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (648 nt):
ATGCAAATTCAGACAATTCTTTTATGTTTTAGCTTTTCATTTTCAGCTGCTTTTTATTTCCATGCTGGAG
AGCGAGAGGAGAAATGTATAATTGAAGACATTCCAAGTGATACATTGATAACAGGGACATTCAAGGTACA
GCAGTGGGACATAGTCAGACATGACTTCCTTGAATCTGCTCCTGGCTTAGGAATGTTTGTGACTGTTACA
ACTTACAATGATGAGGTATTATTATCCAAGTTATATGGTGCACAAGGAACATTCTATTTTACTTCTCATT
CATCTGGTGAACACATCATTTGCTTAGAATCTAATTCTACACAGTTTGTGTCATTTGGAGGAAGTAAGCT
GCGCATCCACTTAGATATTCGAGTTGGAGAACATGACCTTGATGCAGCTATTGTTCAAGCAAAGGATAAA
GTTAATGAAGTAACCTTCAAGCTTCAACATCTAATTGAACAAGTGGAGCAAATACTCAAAGAACAAGACT
ATCAAAGGGACCGTGAAGAAAATTTCCGTATAACCAGTGAAGATACCAATAGAAATGTTTTATGGTGGGC
TTTTGCACAAATATTGATCTTTATCTCAGTTGGAATTTTTCAAATGAAACACCTTAAAGATTTCTTCATA
GCTAAGAAGCTTGTTTAA

Translation (215 aa):
MQIQTILLCFSFSFSAAFYFHAGEREEKCIIEDIPSDTLITGTFKVQQWDIVRHDFLESAPGLGMFVTVT
TYNDEVLLSKLYGAQGTFYFTSHSSGEHIICLESNSTQFVSFGGSKLRIHLDIRVGEHDLDAAIVQAKDK
VNEVTFKLQHLIEQVEQILKEQDYQRDREENFRITSEDTNRNVLWWAFAQILIFISVGIFQMKHLKDFFI
AKKLV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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