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Report for CCDS26809.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26809.1 Public Mus musculus 14 Rpp14 23 108 98 CCDS HistoryNCBI Gene:67053Re-query CCDS DB by CCDS ID:26809.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26809.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023924.3 ENSMUSP00000023924.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023924.3Link to Ensembl Protein Viewer:ENSMUSP00000023924.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000023924Re-query CCDS DB by Protein ID:ENSMUSP00000023924
Original member Current member NCBI NM_025938.4 NP_080214.1 Accepted alive Link to Nucleotide Sequence:NM_025938.4Link to Protein Sequence:NP_080214.1Re-query CCDS DB by Nucleotide ID:NM_025938Re-query CCDS DB by Protein ID:NP_080214Link to BLAST:NP_080214.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080214.1 122 Q9CQH8 122 100% 0 0

Chromosomal Locations for CCDS 26809.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 8083724 8083794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 8083917 8084001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 8087464 8087540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 8088719 8088797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 8089908 8089964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (369 nt):
ATGCCAGCGACTGCATATGAAAGAGTAGTTTACAAGAGCCCCTCAGAGTATCACTACATGAAAGTCTGTC
TAGAGTTTCAAGAACATGGGGTTGGACTGAACGTGGCACAGTTCAAACAGCTGCTCGTCTCAGCCCTGAG
AGACCTGTTTGGGGAGGTCGGTGCCGCTCTGCCTGTGGATGTTCTCACCTACGATGAGAAGACACTGTCG
GCCATCTTGAGAATATGCAGCAGTGGTCTGGTCAAATTATGGAGTTCTTTGACCTTGTTTGGAGCCTATA
AAAGCAAGAAGTGTGCCTTCAGAGTGATTCAGGTGTCTCCCTTTCTCCTTGCATTATCTGGCAATAGCAG
GGAACAAGTATTGGACTGA

Translation (122 aa):
MPATAYERVVYKSPSEYHYMKVCLEFQEHGVGLNVAQFKQLLVSALRDLFGEVGAALPVDVLTYDEKTLS
AILRICSSGLVKLWSSLTLFGAYKSKKCAFRVIQVSPFLLALSGNSREQVLD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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