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Report for CCDS26428.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26428.1 Public Mus musculus 13 Serpinb1a 23 108 98 CCDS HistoryNCBI Gene:66222Re-query CCDS DB by CCDS ID:26428.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26428.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000076352.7 ENSMUSP00000075690.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000076352.7Link to Ensembl Protein Viewer:ENSMUSP00000075690.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000076352Re-query CCDS DB by Protein ID:ENSMUSP00000075690
Original member Current member NCBI NM_025429.2 NP_079705.2 Accepted alive Link to Nucleotide Sequence:NM_025429.2Link to Protein Sequence:NP_079705.2Re-query CCDS DB by Nucleotide ID:NM_025429Re-query CCDS DB by Protein ID:NP_079705Link to BLAST:NP_079705.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079705.2 379 Q9D154 379 100% 0 0

Chromosomal Locations for CCDS 26428.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 32842818 32843222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 32845309 32845476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 32845671 32845813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 32847390 32847507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 32848619 32848756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 32850239 32850406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1140 nt):
ATGGAGCAGCTGAGTTCAGCCAACACCCTCTTCGCCTTGGAGCTGTTCCAAACCCTGAATGAAAGCAGCC
CCACAGGAAACATCTTCTTCTCTCCCTTCAGCATTTCTTCTGCCTTGGCCATGGTCATTCTGGGGGCCAA
AGGCAGCACTGCAGCTCAGCTTTCTAAGACTTTTCATTTTGACTCTGTTGAGGACATCCATTCACGCTTC
CAAAGCCTGAATGCTGAAGTGAGCAAACGTGGAGCATCTCACACTCTGAAACTTGCTAACAGACTGTATG
GAGAGAAAACCTACAACTTCCTTCCTGAATACTTGGCTTCAACCCAGAAAATGTATGGTGCTGACTTGGC
CCCTGTGGATTTTCTGCATGCCTCTGAGGATGCAAGGAAGGAGATAAACCAGTGGGTCAAAGGTCAAACA
GAAGGGAAAATCCCAGAACTGTTGTCTGTGGGTGTGGTGGACAGTATGACCAAACTTGTGCTGGTGAATG
CCATCTACTTTAAGGGAATGTGGGAGGAGAAATTCATGACAGAGGACACAACGGATGCTCCATTCCGACT
GAGTAAGAAAGACACAAAAACAGTGAAGATGATGTATCAAAAGAAAAAATTTCCATTTGGTTACATTTCG
GACCTGAAGTGCAAGGTGCTGGAGATGCCTTACCAGGGTGGAGAACTTAGCATGGTCATTCTGCTGCCTA
AAGACATTGAGGACGAGTCCACGGGTCTTAAGAAGATTGAAAAGCAAATAACTTTGGAAAAACTGCTTGA
ATGGACCAAACGTGAGAACTTGGAATTCATTGATGTCCACGTCAAACTGCCCCGGTTCAAGATAGAAGAG
AGCTATACCCTCAACTCTAACCTGGGCCGCCTGGGAGTGCAGGATCTCTTTAGCAGTAGCAAGGCTGATC
TCTCTGGCATGTCAGGATCCAGAGATCTTTTCATATCAAAAATTGTCCACAAGTCCTTTGTGGAAGTGAA
TGAGGAAGGAACAGAGGCAGCCGCTGCTACAGGAGGCATTGCTACATTCTGTATGTTGTTGCCTGAGGAA
GAATTCACAGTGGACCATCCGTTCATTTTCTTCATTCGGCACAATCCCACATCTAATGTGCTCTTCCTTG
GCAGGGTTTGTTCCCCATAG

Translation (379 aa):
MEQLSSANTLFALELFQTLNESSPTGNIFFSPFSISSALAMVILGAKGSTAAQLSKTFHFDSVEDIHSRF
QSLNAEVSKRGASHTLKLANRLYGEKTYNFLPEYLASTQKMYGADLAPVDFLHASEDARKEINQWVKGQT
EGKIPELLSVGVVDSMTKLVLVNAIYFKGMWEEKFMTEDTTDAPFRLSKKDTKTVKMMYQKKKFPFGYIS
DLKCKVLEMPYQGGELSMVILLPKDIEDESTGLKKIEKQITLEKLLEWTKRENLEFIDVHVKLPRFKIEE
SYTLNSNLGRLGVQDLFSSSKADLSGMSGSRDLFISKIVHKSFVEVNEEGTEAAAATGGIATFCMLLPEE
EFTVDHPFIFFIRHNPTSNVLFLGRVCSP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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