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Report for CCDS61574.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
61574.1 Public Homo sapiens 15 GOLGA8J 24 110 108 CCDS HistoryNCBI Gene:653073Re-query CCDS DB by CCDS ID:61574.1See the combined annotation on chromosome 15 in Sequence Viewer

Public Note for CCDS 61574.1
The exon combination of this CCDS representation is inferred. It is supported by partial transcript alignments and by paralogous golgin A8 family alignments.

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 61574.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000567927.2 ENSP00000456401.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000567927.2Link to Ensembl Protein Viewer:ENSP00000456401.1Re-query CCDS DB by Nucleotide ID:ENST00000567927Re-query CCDS DB by Protein ID:ENSP00000456401
Original member Current member NCBI NM_001282472.2 NP_001269401.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001282472.2Link to Protein Sequence:NP_001269401.1Re-query CCDS DB by Nucleotide ID:NM_001282472Re-query CCDS DB by Protein ID:NP_001269401Link to BLAST:NP_001269401.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001269401.1 632 A6NMD2 632 100% 0 0

Chromosomal Locations for CCDS 61574.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 30083053 30083100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 30084771 30084890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 30085783 30085842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 30086024 30086104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 30086958 30086996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 30087259 30087306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 30087395 30087479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 30087575 30087684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 30088740 30088826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 30088933 30089040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 30089236 30089323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 30089700 30089956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 30090212 30090280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 30091535 30091610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 30092042 30092133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 30092708 30092808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 30092891 30092988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 30093084 30093239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 30093324 30093499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1899 nt):
ATGGCAGAAGAAACTCAACACAACAAATTGGCTGCAGCCAAGAAAAAGTTAAAAGAATATTGGCAGAAAA
ACAGCCCTAGAGTTCCAGCAGGAGCGAACAGGAACAGGAAAACAAATGGCAGTATCCCTGAGAAAGCCAC
TTCTGGTGGTTGCCAGCCACCTAGGGATTCAGCAACAGGTTTCCACAGGGAAGGCCCTACATCATCTGCT
ACCCTGAAAGATCTGGAGAGCCCGTGCCAAGAACGAGCAGTAGTCCTGGATTCAAGGTCCGTAGAAATCA
GTCAACTGAAGAACACCATCAAATCTCTGAAACAACAGAAGAAACAAGTGGAACATCAGCTGGAAGAAGA
AAAGAAAGCAAACAACAAGAAACAGAAAGCCAAAAGGGTGCTAGAGGTTCAAATCCAGACATTGAACATA
CAGAAAGAGGAACTAAATACGGACCTGTACCACATGAAACGTTCTCTCAGATACTTTGAAGAAAAGTCCA
AGGATCTGGCTGTCCGCCTGCAACATTCATTGCAGCGTAAAGGAGAGTTAGAGAGTGTTCTCTCTAATGT
CATGGCCACACAGAAGAAGAAGGCAAACCAGTTGTCCAGCCGCAGCAAAGCACGTACGGAGTGGAAGTTA
GAGCAGTCCATGCGGGAGGAGGCACTACTGAAAGTGCAGCTGACACAGTTCAAGGAGTCATTTCAACAAG
TCCAATTAGAAAGAGATGAGTATTCTGAACATCTAAAAGGAGAGAGGGCCCGGTGGCAGCAGAGGATGAG
AAAAATGTCGCAGGAGATTTGCACATTAAAGAAAGAGAAGCAGCAAGATATGCGTCGGGTAGAGAAGCTG
GAGAGGAGCTTGTCCAAACTCAAAAACCAGATGGCTGAACCCTTGCCCCCGGAGCCCCCAGCAGTGCCCT
CTGAGGTGGAGCTGCAGCACCTGAGGAAGGAACTAGAGAGAGTGGCAGGAGAGCTCCAGGCCCAGGTCAA
AAACAATCAGCGCATAAGTCTCCTGAACCAGCGACAAGAAGAGAGGATTCGGGAGCAGGAAGAGAGGCTT
CGGAAGCAGGAGGAGAGGATTCAGGAGCAGCACAAGAGCCTTCAGCAGCTGGCCAAGCCACAGAGCGTCT
TCAAGGAGCCGAACAATGAGAACAAGAACGCACTGCAGTTGGAGCAGCAAGTAAAGGAGCTACAGGAGAA
GCTTGGCGAGGAGCACCTGGAAGCTGCCAGCCAGCAGAACCAGCAGCTAACGGCCCAGCTGAGCCTCATG
GCTCTCCCTGGGGAAGGACACGGAGGAGAACATCTGGACAGTGAGGGGGAGGAGGCACCTCGGCCCATGC
CGAGTGTCCCAGAGGACCCGGAGAGCAGGGAGGCCATGAGCAGCTTTATGGACCACCTGGAGGAGAAGGC
AGACCTGAGTGAGCTGGTGAAGAAAAAAGAACTCTGCTTCATCCACCACTGGCGAGAGAGATGCCATCAG
AAAACCCATCACCTTTTATCAGAACCAGGGGGCCGTGCCAAAGATGCGGCACTGGGAGGAGGACACCATC
AGGCTGGAGCTCAGGGAGGAGATGAAGGTGAAGCTGCTGGAGCTGCAGCAGATGGTATTGCGGCTTACAG
CAACTACAACAATGGGCACAGAAAATTCCTGGCCGCTGCCCACAACTCTGCTGATGAGCCCGGTCCAGGA
GCCCCAGCCCCCCAGGAGCTTGGGGCTGCAGACAAGCATGGTCATCTTTGTGAGGTGAGCCTCACCTCCT
CTGCCCAAGGAGAGGCCAGGGAGGATCCTCTCCTTGACAAGCCTACTGCACAGCCGATCGTGCAGGACCA
CCAGGAGCACCCAGGCTTGGGCAGCAACTGCTGTGTGCCATTCTTGTGCTGGGCTTGGCTGCCAAGAAGA
AGGAGATAA

Translation (632 aa):
MAEETQHNKLAAAKKKLKEYWQKNSPRVPAGANRNRKTNGSIPEKATSGGCQPPRDSATGFHREGPTSSA
TLKDLESPCQERAVVLDSRSVEISQLKNTIKSLKQQKKQVEHQLEEEKKANNKKQKAKRVLEVQIQTLNI
QKEELNTDLYHMKRSLRYFEEKSKDLAVRLQHSLQRKGELESVLSNVMATQKKKANQLSSRSKARTEWKL
EQSMREEALLKVQLTQFKESFQQVQLERDEYSEHLKGERARWQQRMRKMSQEICTLKKEKQQDMRRVEKL
ERSLSKLKNQMAEPLPPEPPAVPSEVELQHLRKELERVAGELQAQVKNNQRISLLNQRQEERIREQEERL
RKQEERIQEQHKSLQQLAKPQSVFKEPNNENKNALQLEQQVKELQEKLGEEHLEAASQQNQQLTAQLSLM
ALPGEGHGGEHLDSEGEEAPRPMPSVPEDPESREAMSSFMDHLEEKADLSELVKKKELCFIHHWRERCHQ
KTHHLLSEPGGRAKDAALGGGHHQAGAQGGDEGEAAGAAADGIAAYSNYNNGHRKFLAAAHNSADEPGPG
APAPQELGAADKHGHLCEVSLTSSAQGEAREDPLLDKPTAQPIVQDHQEHPGLGSNCCVPFLCWAWLPRR
RR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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