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Report for CCDS43868.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43868.1 Public Homo sapiens 9 BSPRY 24 110 108 CCDS HistoryNCBI Gene:54836Re-query CCDS DB by CCDS ID:43868.1Re-query CCDS DB by GeneID:54836See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43868.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000374183.5 ENSP00000363298.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000374183.5Link to Ensembl Protein Viewer:ENSP00000363298.4Re-query CCDS DB by Nucleotide ID:ENST00000374183Re-query CCDS DB by Protein ID:ENSP00000363298
Original member Current member NCBI NM_017688.3 NP_060158.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017688.3Link to Protein Sequence:NP_060158.2Re-query CCDS DB by Nucleotide ID:NM_017688Re-query CCDS DB by Protein ID:NP_060158Link to BLAST:NP_060158.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060158.2 402 Q5W0U4-1 402 100% 0 0

Chromosomal Locations for CCDS 43868.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 113349580 113349780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 113354240 113354338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 113360507 113360737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 113362369 113362394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 113368259 113368383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 113369616 113370142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1209 nt):
ATGTCCGCCGAGGGCGCGGAGCCGGGGCCGGGGTCCGGGTCCGGGCCCGGGCCGGGGCCACTCTGCCCCG
AACACGGCCAGGCTCTGAGCTGGTTCTGCGGCTCCGAGCGACGGCCCGTGTGCGCCGCCTGCGCGGGGTT
GGGCGGTCGCTGCCGGGGGCACCGCATCCGCCGGGCGGAGGAGCGCGCCGAGGAGCTGCGGAACAAGATT
GTGGACCAGTGTGAGAGGCTGCAGTTACAGAGTGCTGCCATCACCAAGTATGTGGCGGACGTCCTGCCGG
GGAAGAATCAAAGAGCAGTGAGCATGGCCAGTGCAGCGAGGGAACTGGTTATCCAGCGGTTGAGTCTGGT
GAGGAGTCTTTGCGAGAGCGAGGAGCAGCGGTTACTGGAACAGGTGCATGGCGAAGAGGAGCGGGCCCAC
CAGAGCATCCTGACACAGCGGGTGCACTGGGCCGAGGCGCTGCAGAAACTTGACACCATCCGCACTGGCC
TGGTGGGCATGCTTACTCACCTGGATGACCTCCAGCTGATTCAGAAGGAGCAAGAGATTTTCGAGAGGAC
CGAAGAAGCAGAGGGCATTTTGGATCCCCAGGAGTCGGAAATGTTAAACTTTAATGAGAAGTGCACTCGG
AGCCCACTACTGACCCAACTCTGGGCAACGGCGGTTCTTGGGTCTCTCTCAGGCACAGAGGACATACGGA
TCGATGAGAGGACAGTCAGCCCCTTCCTGCAATTGTCAGATGATCGAAAGACCCTGACCTTCAGCACCAA
GAAGTCAAAGGCCTGTGCAGATGGCCCGGAGCGCTTCGACCACTGGCCCAATGCCCTGGCTGCCACCTCC
TTCCAGAATGGGCTCCATGCCTGGATGGTGAATGTCCAGAACAGTTGTGCCTATAAGGTGGGCGTGGCTT
CAGGCCACCTGCCCCGCAAGGGTTCTGGCAGTGACTGCCGTCTGGGCCACAATGCCTTCTCCTGGGTCTT
CTCTCGCTATGATCAGGAGTTTCGTTTCTCACACAATGGGCAGCACGAGCCCCTGGGGCTGCTGCGGGGC
CCAGCCCAGCTGGGTGTAGTGCTGGACTTGCAGGTTCAGGAGCTGCTCTTCTATGAGCCAGCCTCCGGCA
CAGTGCTCTGTGCCCATCATGTGTCCTTCCCGGGGCCCCTCTTCCCAGTCTTTGCTGTGGCCGATCAGAC
CATTTCTATCGTCCGCTGA

Translation (402 aa):
MSAEGAEPGPGSGSGPGPGPLCPEHGQALSWFCGSERRPVCAACAGLGGRCRGHRIRRAEERAEELRNKI
VDQCERLQLQSAAITKYVADVLPGKNQRAVSMASAARELVIQRLSLVRSLCESEEQRLLEQVHGEEERAH
QSILTQRVHWAEALQKLDTIRTGLVGMLTHLDDLQLIQKEQEIFERTEEAEGILDPQESEMLNFNEKCTR
SPLLTQLWATAVLGSLSGTEDIRIDERTVSPFLQLSDDRKTLTFSTKKSKACADGPERFDHWPNALAATS
FQNGLHAWMVNVQNSCAYKVGVASGHLPRKGSGSDCRLGHNAFSWVFSRYDQEFRFSHNGQHEPLGLLRG
PAQLGVVLDLQVQELLFYEPASGTVLCAHHVSFPGPLFPVFAVADQTISIVR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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