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Report for CCDS43865.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43865.1 Public Homo sapiens 9 SNX30 24 110 108 CCDS HistoryNCBI Gene:401548Re-query CCDS DB by CCDS ID:43865.1Re-query CCDS DB by GeneID:401548See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43865.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000374232.8 ENSP00000363349.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000374232.8Link to Ensembl Protein Viewer:ENSP00000363349.3Re-query CCDS DB by Nucleotide ID:ENST00000374232Re-query CCDS DB by Protein ID:ENSP00000363349
Original member Current member NCBI NM_001012994.2 NP_001013012.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001012994.2Link to Protein Sequence:NP_001013012.1Re-query CCDS DB by Nucleotide ID:NM_001012994Re-query CCDS DB by Protein ID:NP_001013012Link to BLAST:NP_001013012.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001013012.1 437 Q5VWJ9 437 100% 0 0

Chromosomal Locations for CCDS 43865.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 112751002 112751157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112804776 112804967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112817705 112817815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112830725 112830883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112836214 112836409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112838498 112838697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112850859 112850945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112864247 112864399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112868784 112868843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1314 nt):
ATGGCGGGCGGGCCCCCCAAGGCCCTGCCGTCCACGGGGCCCCACTCCCTGCGCGACATGCCGCACCCGC
TGGCCGGCTCCAGCAGCGAGGAGGCCGTGGGTGGTGACAGCACGCCCAGCCCGGACCTGCTGATGGCCCG
CAGCTTCGGTGACAAGGATCTCATTTTGCCCAACGGTGGTACTCCAGCAGGTACTTCAAGTCCAGCTTCT
TCATCTTCCCTTCTCAACAGACTTCAGCTTGATGATGATATTGATGGTGAGACTAGAGATCTCTTCGTTA
TAGTTGATGATCCCAAGAAGCATGTGTGTACAATGGAGACTTACATCACCTATAGGATCACCACCAAAAG
TACTCGGGTGGAGTTTGACCTGCCAGAATATTCTGTTCGTCGAAGATACCAGGATTTTGACTGGTTGAGG
AGCAAACTGGAAGAATCCCAGCCCACTCATCTCATTCCCCCTCTTCCCGAGAAGTTTGTGGTAAAAGGTG
TTGTGGATCGTTTTTCAGAAGAGTTTGTGGAGACCAGAAGAAAAGCTTTGGATAAATTTCTAAAAAGAAT
TACGGACCATCCTGTGCTGTCTTTCAATGAACACTTTAATATTTTCCTTACTGCTAAGGACCTGAACGCC
TACAAGAAGCAAGGGATAGCATTGCTGACCAGAATGGGCGAGTCAGTCAAGCACGTCACTGGCGGCTACA
AGCTGAGGACTCGGCCGCTTGAGTTTGCTGCCATAGGTGACTACTTAGATACATTTGCACTCAAACTGGG
AACCATTGATCGAATAGCCCAGCGGATCATCAAAGAAGAAATAGAGTACCTTGTGGAGCTGAGAGAATAC
GGGCCTGTGTACTCCACATGGAGCGCCTTGGAGGGTGAGCTGGCTGAACCCCTGGAGGGTGTGTCAGCTT
GCATTGGGAACTGCTCTACAGCCTTAGAAGAGCTGACAGATGACATGACAGAAGACTTCCTACCTGTGCT
CAGGGAATATATTTTATACTCTGACTCCATGAAGAGTGTATTGAAGAAGAGGGACCAAGTTCAAGCAGAG
TATGAAGCCAAACTGGAAGCTGTGGCTCTGCGGAAGGAAGACCGCCCCAAGGTACCGGCGGACGTCGAGA
AATGTCAGGATCGGATGGAGTGTTTCAATGCTGACCTGAAAGCTGACATGGAGAGGTGGCAGAACAACAA
GAGGCAGGACTTCCGGCAGCTACTCATGGGGATGGCTGACAAGAACATCCAGTATTATGAGAAGTGCCTC
ATGGCGTGGGAGTCGATTATTCCACTACTGCAGGAGAAACAAGAGGCCAAGTAA

Translation (437 aa):
MAGGPPKALPSTGPHSLRDMPHPLAGSSSEEAVGGDSTPSPDLLMARSFGDKDLILPNGGTPAGTSSPAS
SSSLLNRLQLDDDIDGETRDLFVIVDDPKKHVCTMETYITYRITTKSTRVEFDLPEYSVRRRYQDFDWLR
SKLEESQPTHLIPPLPEKFVVKGVVDRFSEEFVETRRKALDKFLKRITDHPVLSFNEHFNIFLTAKDLNA
YKKQGIALLTRMGESVKHVTGGYKLRTRPLEFAAIGDYLDTFALKLGTIDRIAQRIIKEEIEYLVELREY
GPVYSTWSALEGELAEPLEGVSACIGNCSTALEELTDDMTEDFLPVLREYILYSDSMKSVLKKRDQVQAE
YEAKLEAVALRKEDRPKVPADVEKCQDRMECFNADLKADMERWQNNKRQDFRQLLMGMADKNIQYYEKCL
MAWESIIPLLQEKQEAK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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