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Report for CCDS6468.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6468.1 Public Homo sapiens 9 IL33 24 110 108 CCDS HistoryNCBI Gene:90865Re-query CCDS DB by CCDS ID:6468.1Re-query CCDS DB by GeneID:90865See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6468.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000381434.7 ENSP00000370842.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000381434.7Link to Ensembl Protein Viewer:ENSP00000370842.3Re-query CCDS DB by Nucleotide ID:ENST00000381434Re-query CCDS DB by Protein ID:ENSP00000370842
Original member Current member EBI ENST00000682010.1 ENSP00000507310.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000682010.1Link to Ensembl Protein Viewer:ENSP00000507310.1Re-query CCDS DB by Nucleotide ID:ENST00000682010Re-query CCDS DB by Protein ID:ENSP00000507310
Original member Current member NCBI NM_001314044.2 NP_001300973.1 Accepted alive Link to Nucleotide Sequence:NM_001314044.2Link to Protein Sequence:NP_001300973.1Re-query CCDS DB by Nucleotide ID:NM_001314044Re-query CCDS DB by Protein ID:NP_001300973Link to BLAST:NP_001300973.1
Original member Current member NCBI NM_001314045.2 NP_001300974.1 Accepted alive Link to Nucleotide Sequence:NM_001314045.2Link to Protein Sequence:NP_001300974.1Re-query CCDS DB by Nucleotide ID:NM_001314045Re-query CCDS DB by Protein ID:NP_001300974Link to BLAST:NP_001300974.1
Original member Current member NCBI NM_033439.4 NP_254274.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_033439.4Link to Protein Sequence:NP_254274.1Re-query CCDS DB by Nucleotide ID:NM_033439Re-query CCDS DB by Protein ID:NP_254274Link to BLAST:NP_254274.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001300973.1 270 O95760-1 270 100% 0 0
NP_001300974.1 270 O95760-1 270 100% 0 0
NP_254274.1 270 O95760-1 270 100% 0 0

Chromosomal Locations for CCDS 6468.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 6241695 6241785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 6250474 6250599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 6251140 6251265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 6252866 6252991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 6253552 6253602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 6254462 6254553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 6255968 6256168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (813 nt):
ATGAAGCCTAAAATGAAGTATTCAACCAACAAAATTTCCACAGCAAAGTGGAAGAACACAGCAAGCAAAG
CCTTGTGTTTCAAGCTGGGAAAATCCCAACAGAAGGCCAAAGAAGTTTGCCCCATGTACTTTATGAAGCT
CCGCTCTGGCCTTATGATAAAAAAGGAGGCCTGTTACTTTAGGAGAGAAACCACCAAAAGGCCTTCACTG
AAAACAGGTAGAAAGCACAAAAGACATCTGGTACTCGCTGCCTGTCAACAGCAGTCTACTGTGGAGTGCT
TTGCCTTTGGTATATCAGGGGTCCAGAAATATACTAGAGCACTTCATGATTCAAGTATCACAGGAATTTC
ACCTATTACAGAGTATCTTGCTTCTCTAAGCACATACAATGATCAATCCATTACTTTTGCTTTGGAGGAT
GAAAGTTATGAGATATATGTTGAAGACTTGAAAAAAGATGAAAAGAAAGATAAGGTGTTACTGAGTTACT
ATGAGTCTCAACACCCCTCAAATGAATCAGGTGACGGTGTTGATGGTAAGATGTTAATGGTAACCCTGAG
TCCTACAAAAGACTTCTGGTTGCATGCCAACAACAAGGAACACTCTGTGGAGCTCCATAAGTGTGAAAAA
CCACTGCCAGACCAGGCCTTCTTTGTCCTTCATAATATGCACTCCAACTGTGTTTCATTTGAATGCAAGA
CTGATCCTGGAGTGTTTATAGGTGTAAAGGATAATCATCTTGCTCTGATTAAAGTAGACTCTTCTGAGAA
TTTGTGTACTGAAAATATCTTGTTTAAGCTCTCTGAAACTTAG

Translation (270 aa):
MKPKMKYSTNKISTAKWKNTASKALCFKLGKSQQKAKEVCPMYFMKLRSGLMIKKEACYFRRETTKRPSL
KTGRKHKRHLVLAACQQQSTVECFAFGISGVQKYTRALHDSSITGISPITEYLASLSTYNDQSITFALED
ESYEIYVEDLKKDEKKDKVLLSYYESQHPSNESGDGVDGKMLMVTLSPTKDFWLHANNKEHSVELHKCEK
PLPDQAFFVLHNMHSNCVSFECKTDPGVFIGVKDNHLALIKVDSSENLCTENILFKLSET


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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