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Report for CCDS6414.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6414.1 Public Homo sapiens 8 EXOSC4 24 110 108 CCDS HistoryNCBI Gene:54512Re-query CCDS DB by CCDS ID:6414.1Re-query CCDS DB by GeneID:54512See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6414.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000316052.6 ENSP00000315476.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000316052.6Link to Ensembl Protein Viewer:ENSP00000315476.4Re-query CCDS DB by Nucleotide ID:ENST00000316052Re-query CCDS DB by Protein ID:ENSP00000315476
Original member Current member NCBI NM_019037.3 NP_061910.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_019037.3Link to Protein Sequence:NP_061910.1Re-query CCDS DB by Nucleotide ID:NM_019037Re-query CCDS DB by Protein ID:NP_061910Link to BLAST:NP_061910.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061910.1 245 Q9NPD3 245 100% 0 0

Chromosomal Locations for CCDS 6414.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 144078729 144078899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144079943 144080149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144080242 144080601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (738 nt):
ATGGCGGGGCTGGAGCTCTTGTCGGACCAGGGCTACCGGGTGGACGGGCGGCGCGCCGGGGAGCTGCGCA
AGATCCAGGCGCGGATGGGCGTGTTCGCGCAGGCTGACGGCTCGGCCTACATTGAGCAGGGCAACACCAA
GGCACTGGCTGTGGTCTACGGCCCGCACGAGATCCGGGGCTCCCGGGCTCGAGCCCTGCCGGACAGGGCC
CTAGTGAACTGTCAATATAGTTCAGCGACCTTCAGCACAGGTGAGCGCAAGCGACGGCCACATGGGGACC
GTAAGTCCTGTGAGATGGGCCTGCAGCTCCGCCAGACTTTCGAAGCAGCCATCCTCACACAGCTGCACCC
ACGCTCCCAGATTGATATCTATGTGCAGGTGCTACAGGCAGATGGTGGGACCTATGCAGCTTGTGTGAAT
GCAGCCACGCTGGCAGTGCTGGATGCCGGGATACCCATGAGAGACTTTGTGTGTGCGTGCTCAGCTGGCT
TCGTGGACGGCACAGCCCTGGCGGACCTCAGCCATGTGGAGGAAGCAGCTGGTGGCCCCCAGCTGGCCCT
GGCCCTGCTGCCAGCCTCAGGACAGATTGCGCTGCTTGAGATGGATGCCCGGCTGCACGAGGACCACCTG
GAGCGGGTGTTGGAGGCTGCTGCCCAGGCTGCCCGAGATGTGCACACCCTCTTAGATCGAGTGGTCCGGC
AGCATGTGCGTGAGGCCTCTATCTTGCTGGGGGACTGA

Translation (245 aa):
MAGLELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRA
LVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVN
AATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLPASGQIALLEMDARLHEDHL
ERVLEAAAQAARDVHTLLDRVVRQHVREASILLGD


Links Key
 Links to:   History report
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  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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