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Report for CCDS55252.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55252.1 Public Homo sapiens 8 RALYL 24 110 108 CCDS HistoryNCBI Gene:138046Re-query CCDS DB by CCDS ID:55252.1Re-query CCDS DB by GeneID:138046See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55252.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000517638.5 ENSP00000430128.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000517638.5Link to Ensembl Protein Viewer:ENSP00000430128.1Re-query CCDS DB by Nucleotide ID:ENST00000517638Re-query CCDS DB by Protein ID:ENSP00000430128
Original member Current member NCBI NM_001100391.3 NP_001093861.1 Accepted alive Link to Nucleotide Sequence:NM_001100391.3Link to Protein Sequence:NP_001093861.1Re-query CCDS DB by Nucleotide ID:NM_001100391Re-query CCDS DB by Protein ID:NP_001093861Link to BLAST:NP_001093861.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001093861.1 304 Q86SE5-3 304 100% 0 0

Chromosomal Locations for CCDS 55252.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 84184999 84185014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84529299 84529577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84774579 84774654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84804770 84804802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84849980 84850027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84862296 84862453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84873284 84873397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84887604 84887776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84920894 84920911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (915 nt):
ATGAGTAAACGACGCAGATTAAAGCAAGGAGAGCCAATCATGACTGGCAAAACACAGACCAGCAACGTCA
CCAATAAGAATGACCCCAAGTCCATCAACTCCCGTGTTTTCATCGGCAATCTAAATACGGCAATTGTCAA
GAAAGTTGACATTGAAGCCATTTTTTCAAAGTATGGAAAAATAGTTGGATGTTCCGTTCACAAAGGTTAT
GCATTTGTACAGTACATGAGTGAGCGACATGCAAGAGCTGCAGTGGCTGGAGAAAATGCCAGAGTCATCG
CCGGCCAACCACTTGATATCAACATGGCAGGAGAGCCCAAACCATACAGACCAAAACCTGGAAACAAGAG
GCCCCTTTCTGCACTTTACAGACTTGAATCAAAGGAACCTTTCCTGTCTGTTGGCGGTTATGTCTTTGAC
TATGATTACTACAGAGATGATTTCTACAATCGGTTATTTGATTACCACGGGCGTGTGCCTCCACCTCCCC
GTGCAGTAATTCCGCTGAAGCGTCCCAGAGTGGCAGTCACAACGACTCGCAGGGGGAAAGGAGTCTTTTC
CATGAAAGGTGGATCGAGATCTACTGCCAGTGGGTCAACAGGTTCTAAATTGAAATCAGATGAGTTACAG
ACCATCAAGAAAGAATTAACCCAGATCAAAACTAAAATTGACTCCTTGCTAGGGCGCCTGGAGAAGATTG
AGAAACAGCAGAAGGCGGAGGCAGAAGCTCAGAAGAAGCAATTGGAAGAGAGTCTAGTGCTGATCCAAGA
GGAATGTGTGTCAGAGATTGCAGATCACTCTACAGAGGAGCCTGCTGAAGGAGGGCCAGATGCCGATGGA
GAAGAGATGACAGATGGGATAGAGGAGGACTTCGATGAAGATGGGGGTCATGAGCTGTTTCTACAGATAA
AGTGA

Translation (304 aa):
MSKRRRLKQGEPIMTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGY
AFVQYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLSVGGYVFD
YDYYRDDFYNRLFDYHGRVPPPPRAVIPLKRPRVAVTTTRRGKGVFSMKGGSRSTASGSTGSKLKSDELQ
TIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLVLIQEECVSEIADHSTEEPAEGGPDADG
EEMTDGIEEDFDEDGGHELFLQIK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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