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Report for CCDS6177.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6177.1 Public Homo sapiens 8 GGH 24 110 108 CCDS HistoryNCBI Gene:8836Re-query CCDS DB by CCDS ID:6177.1Re-query CCDS DB by GeneID:8836See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6177.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000260118.7 ENSP00000260118.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000260118.7Link to Ensembl Protein Viewer:ENSP00000260118.6Re-query CCDS DB by Nucleotide ID:ENST00000260118Re-query CCDS DB by Protein ID:ENSP00000260118
Original member Current member NCBI NM_003878.3 NP_003869.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003878.3Link to Protein Sequence:NP_003869.1Re-query CCDS DB by Nucleotide ID:NM_003878Re-query CCDS DB by Protein ID:NP_003869Link to BLAST:NP_003869.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003869.1 318 Q92820 318 100% 0 0

Chromosomal Locations for CCDS 6177.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 63015332 63015453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 63017493 63017630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 63023907 63023997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 63024080 63024186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 63026158 63026296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 63027181 63027265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 63030167 63030217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 63035656 63035770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 63038660 63038768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (957 nt):
ATGGCCAGTCCGGGCTGCCTGCTGTGCGTGCTGGGCCTGCTACTCTGCGGGGCGGCGAGCCTCGAGCTGT
CTAGACCCCACGGCGACACCGCCAAGAAGCCCATCATCGGAATATTAATGCAAAAATGCCGTAATAAAGT
CATGAAAAACTATGGAAGATACTATATTGCTGCGTCCTATGTAAAGTACTTGGAGTCTGCAGGTGCGAGA
GTTGTACCAGTAAGGCTGGATCTTACAGAGAAAGACTATGAAATACTTTTCAAATCTATTAATGGAATCC
TTTTCCCTGGAGGAAGTGTTGACCTCAGACGCTCAGATTATGCTAAAGTGGCCAAAATATTTTATAACTT
GTCCATACAGAGTTTTGATGATGGAGACTATTTTCCTGTGTGGGGCACATGCCTTGGATTTGAAGAGCTT
TCACTGCTGATTAGTGGAGAGTGCTTATTAACTGCCACAGATACTGTTGACGTGGCAATGCCGCTGAACT
TCACTGGAGGTCAATTGCACAGCAGAATGTTCCAGAATTTTCCTACTGAGTTGTTGCTGTCATTAGCAGT
AGAACCTCTGACTGCCAATTTCCATAAGTGGAGCCTCTCCGTGAAGAATTTTACAATGAATGAAAAGTTA
AAGAAGTTTTTCAATGTCTTAACTACAAATACAGATGGCAAGATTGAGTTTATTTCAACAATGGAAGGAT
ATAAGTATCCAGTATATGGTGTCCAGTGGCATCCAGAGAAAGCACCTTATGAGTGGAAGAATTTGGATGG
CATTTCCCATGCACCTAATGCTGTGAAAACCGCATTTTATTTAGCAGAGTTTTTTGTTAATGAAGCTCGG
AAAAACAACCATCATTTTAAATCTGAATCTGAAGAGGAGAAAGCATTGATTTATCAGTTCAGTCCAATTT
ATACTGGAAATATTTCTTCATTTCAGCAATGTTACATATTTGATTGA

Translation (318 aa):
MASPGCLLCVLGLLLCGAASLELSRPHGDTAKKPIIGILMQKCRNKVMKNYGRYYIAASYVKYLESAGAR
VVPVRLDLTEKDYEILFKSINGILFPGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEEL
SLLISGECLLTATDTVDVAMPLNFTGGQLHSRMFQNFPTELLLSLAVEPLTANFHKWSLSVKNFTMNEKL
KKFFNVLTTNTDGKIEFISTMEGYKYPVYGVQWHPEKAPYEWKNLDGISHAPNAVKTAFYLAEFFVNEAR
KNNHHFKSESEEEKALIYQFSPIYTGNISSFQQCYIFD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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