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Report for CCDS83258.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
83258.1 Public Homo sapiens 8 REEP4 24 110 108 CCDS HistoryNCBI Gene:80346Re-query CCDS DB by CCDS ID:83258.1Re-query CCDS DB by GeneID:80346See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 83258.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000523293.2 ENSP00000428709.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000523293.2Link to Ensembl Protein Viewer:ENSP00000428709.1Re-query CCDS DB by Nucleotide ID:ENST00000523293Re-query CCDS DB by Protein ID:ENSP00000428709
Original member Current member NCBI NM_001316964.2 NP_001303893.1 Accepted alive Link to Nucleotide Sequence:NM_001316964.2Link to Protein Sequence:NP_001303893.1Re-query CCDS DB by Nucleotide ID:NM_001316964Re-query CCDS DB by Protein ID:NP_001303893Link to BLAST:NP_001303893.1

Chromosomal Locations for CCDS 83258.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 22138350 22138552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22138926 22139061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22139416 22139529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22139963 22140083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22140172 22140248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22140625 22140697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22141451 22141482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (756 nt):
ATGGTGTCCTGGATGATCTGTCGCCTGGTGGTGCTGGTGTTTGGGATGCTGTGTCCAGCTTATGCTTCCT
ATAAGGCTGTGAAGACCAAGAACATTCGTGAATATGTGCGGTGGATGATGTACTGGATTGTTTTTGCACT
CTTCATGGCAGCAGAGATCGTTACAGACATTTTTATCTCCTGGTTCCCTTTCTACTATGAGATCAAGATG
GCCTTCGTGCTGTGGCTGCTCTCACCCTACACCAAGGGCGCCAGCCTGCTTTACCGCAAGTTTGTCCACC
CGTCCCTGTCCCGCCATGAGAAGGAGATCGACGCGTACATCGTGCAGGCCAAGGAGCGCAGCTACGAGAC
CGTGCTCAGCTTCGGGAAGCGGGGCCTCAACATTGCCGCCTCCGCTGCTGTGCAGGCTGCCACCAAGAGT
CAGGGGGCGCTGGCCGGCAGGCTGCGGAGCTTCTCCATGCAGGACCTGCGCTCCATCTCTGACGCACCTG
CCCCTGCCTACCATGACCCCCTCTACCTGGAGGACCAGGTGTCCCACCGGAGGCCACCCATTGGGCACCT
CGCGCTCCCTGAAGGTTCGGACGAGGAAAAAGACTGTGCCCTCAGACGTGGACAGCTAGGGTCTGCTGCA
TCTGCCCCCTTCTTACCTCGTGCCCTGCAGGGCTCCAGGGCTATTTGGAGGGACCTTGGGCTGCACATCT
GGCCTGCCTGCACCAGCTGCCTGGGCCCCACCCTCCTGACTCCTGCTGATGGTTAA

Translation (251 aa):
MVSWMICRLVVLVFGMLCPAYASYKAVKTKNIREYVRWMMYWIVFALFMAAEIVTDIFISWFPFYYEIKM
AFVLWLLSPYTKGASLLYRKFVHPSLSRHEKEIDAYIVQAKERSYETVLSFGKRGLNIAASAAVQAATKS
QGALAGRLRSFSMQDLRSISDAPAPAYHDPLYLEDQVSHRRPPIGHLALPEGSDEEKDCALRRGQLGSAA
SAPFLPRALQGSRAIWRDLGLHIWPACTSCLGPTLLTPADG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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