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Report for CCDS55208.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55208.1 Public Homo sapiens 8 GFRA2 24 110 108 CCDS HistoryNCBI Gene:2675Re-query CCDS DB by CCDS ID:55208.1Re-query CCDS DB by GeneID:2675See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55208.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000517892.5 ENSP00000429979.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000517892.5Link to Ensembl Protein Viewer:ENSP00000429979.1Re-query CCDS DB by Nucleotide ID:ENST00000517892Re-query CCDS DB by Protein ID:ENSP00000429979
Original member Current member NCBI NM_001165038.2 NP_001158510.1 Accepted alive Link to Nucleotide Sequence:NM_001165038.2Link to Protein Sequence:NP_001158510.1Re-query CCDS DB by Nucleotide ID:NM_001165038Re-query CCDS DB by Protein ID:NP_001158510Link to BLAST:NP_001158510.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001158510.1 359 O00451-3 359 100% 0 0

Chromosomal Locations for CCDS 55208.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 21693278 21693400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 21694464 21694517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 21702805 21702977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 21704985 21705125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 21705932 21706041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 21750588 21750942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 21774972 21775055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 21788120 21788159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1080 nt):
ATGATCTTGGCAAACGTCTTCTGCCTCTTCTTCTTTCTAGGTGAGGAGTTCTACGAAGCCTCCCCCTATG
AGCCGGTGACCTCCCGCCTCTCGGACATCTTCAGGCTTGCTTCAATCTTCTCAGGGACAGGGGCAGACCC
GGTGGTCAGCGCCAAGAGCAACCATTGCCTGGATGCTGCCAAGGCCTGCAACCTGAATGACAACTGCAAG
AAGCTGCGCTCCTCCTACATCTCCATCTGCAACCGCGAGATCTCGCCCACCGAGCGCTGCAACCGCCGCA
AGTGCCACAAGGCCCTGCGCCAGTTCTTCGACCGGGTGCCCAGCGAGTACACCTACCGCATGCTCTTCTG
CTCCTGCCAAGACCAGGCGTGCGCTGAGCGCCGCCGGCAAACCATCCTGCCCAGCTGCTCCTATGAGGAC
AAGGAGAAGCCCAACTGCCTGGACCTGCGTGGCGTGTGCCGGACTGACCACCTGTGTCGGTCCCGGCTGG
CCGACTTCCATGCCAATTGTCGAGCCTCCTACCAGACGGTCACCAGCTGCCCTGCGGACAATTACCAGGC
GTGTCTGGGCTCTTATGCTGGCATGATTGGGTTTGACATGACACCTAACTATGTGGACTCCAGCCCCACT
GGCATCGTGGTGTCCCCCTGGTGCAGCTGTCGTGGCAGCGGGAACATGGAGGAGGAGTGTGAGAAGTTCC
TCAGGGACTTCACCGAGAACCCATGCCTCCGGAACGCCATCCAGGCCTTTGGCAACGGCACGGACGTGAA
CGTGTCCCCAAAAGGCCCCTCGTTCCAGGCCACCCAGGCCCCTCGGGTGGAGAAGACGCCTTCTTTGCCA
GATGACCTCAGTGACAGTACCAGCTTGGGGACCAGTGTCATCACCACCTGCACGTCTGTCCAGGAGCAGG
GGCTGAAGGCCAACAACTCCAAAGAGTTAAGCATGTGCTTCACAGAGCTCACGACAAATATCATCCCAGG
GAGTAACAAGGTGATCAAACCTAACTCAGGCCCCAGCAGAGCCAGACCGTCGGCTGCCTTGACCGTGCTG
TCTGTCCTGATGCTGAAACTGGCCTTGTAG

Translation (359 aa):
MILANVFCLFFFLGEEFYEASPYEPVTSRLSDIFRLASIFSGTGADPVVSAKSNHCLDAAKACNLNDNCK
KLRSSYISICNREISPTERCNRRKCHKALRQFFDRVPSEYTYRMLFCSCQDQACAERRRQTILPSCSYED
KEKPNCLDLRGVCRTDHLCRSRLADFHANCRASYQTVTSCPADNYQACLGSYAGMIGFDMTPNYVDSSPT
GIVVSPWCSCRGSGNMEEECEKFLRDFTENPCLRNAIQAFGNGTDVNVSPKGPSFQATQAPRVEKTPSLP
DDLSDSTSLGTSVITTCTSVQEQGLKANNSKELSMCFTELTTNIIPGSNKVIKPNSGPSRARPSAALTVL
SVLMLKLAL


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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