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Report for CCDS5987.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5987.2 Public Homo sapiens 8 LONRF1 24 110 108 CCDS HistoryNCBI Gene:91694Re-query CCDS DB by CCDS ID:5987.2Re-query CCDS DB by GeneID:91694See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 5987.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000398246.8 ENSP00000381298.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000398246.8Link to Ensembl Protein Viewer:ENSP00000381298.3Re-query CCDS DB by Nucleotide ID:ENST00000398246Re-query CCDS DB by Protein ID:ENSP00000381298
Original member Current member NCBI NM_152271.5 NP_689484.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152271.5Link to Protein Sequence:NP_689484.3Re-query CCDS DB by Nucleotide ID:NM_152271Re-query CCDS DB by Protein ID:NP_689484Link to BLAST:NP_689484.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689484.3 773 Q17RB8-1 773 100% 0 0

Chromosomal Locations for CCDS 5987.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 12723096 12723254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 12725727 12725879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 12728901 12729063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 12729174 12729332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 12731736 12731857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 12735286 12735400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 12736701 12736797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 12736900 12737140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 12737995 12738144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 12740874 12740996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 12743164 12743282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 12754700 12755420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2322 nt):
ATGTCCTCTCCGGCGGTGGCGAGGACCTCCCCAGGAGGGAGTCGGGAGATGGCCCCAGCGCCGCAGGGCC
GAGGCCGGTTCTGGGAAGTGGGCGGCGGCAGCGGCCATCGGCTGGAGCGCGCGGCCGCGGAGTCGGAGCG
CTGGGAGCTGCTGCTCCGCCGCGGGGAGCTGCTGGCGCTGGGCGGCCACCTGAAGGGCGCGCTGGAGGCG
TTCGCGGCGGCGCTGCGCCGCGGGGCCCCGGCCAGGCCCGAGTGCCTGGGCGCCCTGGTGGACTGCCTGG
TGTTCAACTACCGGCTCCGCCACGGGCTGGGCTGGAGCGCGGCCCCGGTTGCAGGCGCTGACGGCGGCGC
CGGCGGGCTCCTCAGATGCCTGGGCTGCCGGGGCTTCCTGAGCGAGCCGGTGACCGTGCCCTGTGGCCAC
AGCTACTGCCGCCGCTGCCTGCGGAGGGAACTCCGCGCCCGCTGCCGCCTCTGCCGGGACCGGCTGCCGC
CCGCCACCGCCAGTGCCACTGATGCTGAAGGGACCGCCCCGCGGCCGCCGCCTCTGGCCGCCGCCATCGC
CGCTTCAGACTTCAGAACCAGCGTCGTCCTCAACCACCTGGCCGAGAAGTGGTTTCCGGGCCAGCGCGAG
CGGGCCCGGGCGGCCGGCAGGCTCGGGGAGCTACTGCACCAGGGGCGCTACCGGGAGGCCCTGGCCGCCG
CCTGCGAGGCGCTGCGAGCAGAACCCAGTGACTTGATTGTAAAAATTTACAGAGCGGAATCATATGCTGG
TCTCCAAGAGTTTAAAGCAGCCATAGAAGATTTAAATGCAGTTCTTTTTCAACTTCCAGATTGGCCTGAG
GTCTACTTCAGGAAAGGAAAAGTACTCTGCGATGCTGGTTTTTTAGGTGATGCCTTACAACTCTTTCTTC
AGTGCTTAGCCCTTGATGAAGATTTTGCACCTGCAAAGCTGCAAGTACAAAAGATTTTATGTGATTTATT
ATTACCTGAAAACTTAAAAGAAGGCCTGAAGGAATCTTCCTGGAGTTCATTACCATGTACTAAAAACAGA
CCTTTTGATTTTCATTCAGTGATGGAAGAGTCTCAGTCTCTCAATGAACCTAGCCCAAAGCAGAGTGAAG
AAATACCAGAGGTCACTTCAGAGCCTGTCAAAGGAAGCTTAAACCGTGCTCAGTCAGCACAGTCTATAAA
TTCAACAGAAATGCCTGCCAGAGAGGACTGTTTAAAAAGAGTGTCCTCAGAACCTGTTCTGTCAGTTCAA
GAAAAAGGTGTTCTGCTGAAAAGAAAGTTGTCTCTTTTAGAACAGGATGTGATTGTAAATGAAGATGGAA
GAAATAAGCTGAAAAAACAAGGAGAAACTCCCAATGAAGTCTGTATGTTTTCCTTAGCTTATGGTGATAT
TCCAGAAGAATTAATCGATGTCTCAGATTTCGAGTGTTCTCTCTGCATGAGGTTGTTTTTTGAGCCAGTA
ACAACCCCTTGCGGACATTCGTTCTGTAAGAATTGTCTTGAGCGTTGTTTAGATCATGCACCATATTGTC
CTCTTTGCAAAGAAAGCTTAAAAGAGTATCTAGCAGATAGGAGGTACTGTGTCACACAGCTGTTGGAAGA
ATTAATAGTGAAGTATCTGCCTGATGAACTGTCTGAGAGAAAAAAAATATATGATGAAGAAACTGCTGAA
CTCTCACACTTGACCAAGAATGTTCCAATATTTGTTTGCACTATGGCCTACCCCACTGTGCCTTGCCCTC
TCCATGTATTTGAGCCAAGATACAGATTGATGATTCGAAGAAGTATACAGACTGGAACCAAACAGTTTGG
CATGTGTGTCAGTGATACACAAAATAGTTTTGCAGATTATGGTTGTATGTTACAAATTAGAAACGTGCAT
TTCTTACCGGACGGAAGGTCTGTGGTTGATACAGTTGGAGGAAAGCGGTTTAGGGTTTTAAAAAGAGGAA
TGAAAGATGGATATTGCACTGCCGACATTGAATATCTGGAAGATGTTAAGGTTGAGAATGAAGATGAGAT
TAAGAATCTCAGAGAGCTTCATGATTTGGTTTACTCTCAAGCCTGCAGCTGGTTTCAGAATTTAAGAGAC
AGATTTCGAAGCCAAATTCTTCAGCATTTCGGATCAATGCCCGAGAGGGAGGAAAACCTTCAGGCAGCCC
CTAATGGACCTGCATGGTGTTGGTGGCTTCTTGCAGTTCTCCCTGTAGACCCACGATACCAGCTGTCGGT
TTTGTCAATGAAGTCTTTGAAAGAACGGTTGACCAAGATACAGCATATACTGACCTATTTTTCTAGAGAC
CAATCTAAGTAA

Translation (773 aa):
MSSPAVARTSPGGSREMAPAPQGRGRFWEVGGGSGHRLERAAAESERWELLLRRGELLALGGHLKGALEA
FAAALRRGAPARPECLGALVDCLVFNYRLRHGLGWSAAPVAGADGGAGGLLRCLGCRGFLSEPVTVPCGH
SYCRRCLRRELRARCRLCRDRLPPATASATDAEGTAPRPPPLAAAIAASDFRTSVVLNHLAEKWFPGQRE
RARAAGRLGELLHQGRYREALAAACEALRAEPSDLIVKIYRAESYAGLQEFKAAIEDLNAVLFQLPDWPE
VYFRKGKVLCDAGFLGDALQLFLQCLALDEDFAPAKLQVQKILCDLLLPENLKEGLKESSWSSLPCTKNR
PFDFHSVMEESQSLNEPSPKQSEEIPEVTSEPVKGSLNRAQSAQSINSTEMPAREDCLKRVSSEPVLSVQ
EKGVLLKRKLSLLEQDVIVNEDGRNKLKKQGETPNEVCMFSLAYGDIPEELIDVSDFECSLCMRLFFEPV
TTPCGHSFCKNCLERCLDHAPYCPLCKESLKEYLADRRYCVTQLLEELIVKYLPDELSERKKIYDEETAE
LSHLTKNVPIFVCTMAYPTVPCPLHVFEPRYRLMIRRSIQTGTKQFGMCVSDTQNSFADYGCMLQIRNVH
FLPDGRSVVDTVGGKRFRVLKRGMKDGYCTADIEYLEDVKVENEDEIKNLRELHDLVYSQACSWFQNLRD
RFRSQILQHFGSMPEREENLQAAPNGPAWCWWLLAVLPVDPRYQLSVLSMKSLKERLTKIQHILTYFSRD
QSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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