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Report for CCDS56520.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56520.1 Public Homo sapiens 7 SLC4A2 24 110 108 CCDS HistoryNCBI Gene:6522Re-query CCDS DB by CCDS ID:56520.1Re-query CCDS DB by GeneID:6522See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56520.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000392826.6 ENSP00000376571.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000392826.6Link to Ensembl Protein Viewer:ENSP00000376571.2Re-query CCDS DB by Nucleotide ID:ENST00000392826Re-query CCDS DB by Protein ID:ENSP00000376571
Original member Current member NCBI NM_001199693.1 NP_001186622.1 Accepted alive Link to Nucleotide Sequence:NM_001199693.1Link to Protein Sequence:NP_001186622.1Re-query CCDS DB by Nucleotide ID:NM_001199693Re-query CCDS DB by Protein ID:NP_001186622Link to BLAST:NP_001186622.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186622.1 1232 P04920-3 1232 100% 0 0

Chromosomal Locations for CCDS 56520.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 151062640 151062663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151064202 151064367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151064526 151064767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151064848 151064966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151066517 151066761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151066851 151066993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151067874 151068054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151069947 151070082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151070181 151070346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151070457 151070571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151070727 151070911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151071072 151071297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151071390 151071605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151071689 151071837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151071942 151072136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151074039 151074293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151074399 151074488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151074675 151074841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151075255 151075508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151075606 151075775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151076013 151076186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151076287 151076367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3699 nt):
ATGGACTTCCTCCTGCGGCCTCAGCCAGAGCCAGAGAGCTTGGGCCCTGGGACGCCTGGGTTCCCCGAGC
AGGAGGAAGACGAACTTCACCGCACCCTGGGCGTGGAGCGGTTTGAGGAGATCCTACAGGAGGCCGGGTC
TCGTGGAGGGGAGGAGCCAGGCCGCAGCTATGGGGAGGAAGACTTTGAGTACCACCGCCAGTCCTCCCAC
CACATCCATCACCCACTGTCCACCCACCTGCCTCCGGATGCACGCCGCCGCAAGACACCCCAGGGCCCAG
GACGGAAGCCTCGAAGGCGCCCGGGAGCCTCCCCGACTGGAGAAACCCCGACCATTGAGGAGGGGGAGGA
AGATGAGGATGAGGCCAGCGAGGCTGAGGGGGCCCGGGCTCTCACTCAGCCGTCCCCTGTCTCCACACCC
TCCTCGGTGCAGTTCTTTCTCCAAGAGGATGACAGTGCTGACCGGAAGGCAGAGAGGACCAGTCCATCTT
CCCCTGCACCACTGCCCCACCAGGAGGCGACTCCTCGGGCCTCCAAAGGGGCCCAGGCTGGAACCCAGGT
GGAGGAGGCGGAGGCGGAGGCGGTGGCGGTGGCCAGTGGCACTGCAGGGGGTGACGACGGGGGTGCCTCG
GGGCGCCCCCTGCCCAAAGCCCAGCCTGGGCACCGCAGCTACAACCTTCAGGAGAGGAGGCGCATCGGGA
GCATGACTGGGGCTGAGCAGGCACTGCTGCCCCGGGTCCCCACGGATGAGATTGAGGCCCAGACGCTGGC
CACGGCCGACCTAGACCTCATGAAGAGTCACCGGTTTGAGGACGTTCCTGGGGTGCGGCGGCACTTGGTG
CGGAAGAATGCCAAAGGTTCCACACAGAGTGGCCGAGAAGGGCGGGAGCCTGGCCCCACACCTCGGGCCC
GACCCCGGGCCCCCCACAAGCCCCATGAGGTGTTTGTGGAGCTGAATGAGTTGCTCCTGGACAAAAACCA
GGAGCCCCAGTGGCGGGAGACAGCTCGCTGGATCAAATTTGAAGAGGACGTGGAGGAGGAGACTGAGCGC
TGGGGGAAGCCCCACGTGGCCTCCCTCTCCTTCCGCAGTCTCCTGGAGCTCCGCAGGACCCTGGCCCATG
GGGCTGTGCTCTTGGATCTGGACCAGCAGACCCTGCCCGGAGTGGCCCACCAGGTGGTGGAGCAGATGGT
CATCTCTGACCAGATCAAGGCCGAGGACAGGGCCAACGTGCTGCGGGCTCTGCTGTTGAAACACAGCCAC
CCAAGTGATGAGAAGGACTTCTCCTTCCCCCGCAACATCTCAGCTGGCTCCCTGGGCTCCCTGCTGGGGC
ATCACCATGGTCAGGGGGCTGAGAGTGACCCCCACGTCACCGAGCCTCTCATGGGAGGTGTTCCTGAGAC
CCGGCTGGAGGTGGAGCGAGAGCGTGAGCTGCCGCCTCCAGCACCACCAGCTGGCATCACCCGCTCCAAG
TCCAAGCACGAGCTGAAACTGCTGGAGAAGATTCCTGAGAATGCCGAGGCCACGGTGGTCCTTGTGGGCT
GCGTGGAGTTCCTCTCCCGCCCCACCATGGCCTTTGTGCGGCTCCGGGAGGCTGTGGAGTTGGACGCAGT
GTTGGAGGTGCCGGTGCCTGTGCGTTTCCTCTTCCTGCTGCTGGGCCCGAGTAGTGCCAACATGGACTAC
CACGAGATCGGCCGCTCCATCTCCACCCTCATGTCAGACAAGCAATTCCACGAGGCAGCCTACCTGGCTG
ACGAGCGGGAGGACCTGCTGACGGCCATCAACGCCTTCCTGGACTGCAGCGTGGTGCTGCCGCCTTCAGA
AGTGCAGGGCGAGGAGCTGCTGCGCTCTGTGGCCCACTTCCAGCGCCAGATGCTCAAGAAGCGAGAGGAG
CAGGGCCGGCTGCTACCTACAGGGGCTGGGCTGGAGCCCAAATCTGCCCAAGATAAGGCGCTCCTGCAGA
TGGTAGAGGCGGCAGGGGCAGCTGAAGATGATCCCCTTCGGCGGACGGGGCGGCCCTTTGGGGGGCTGAT
CCGAGATGTGCGGCGCCGCTATCCCCACTACCTGAGTGACTTCCGAGATGCACTTGACCCTCAGTGCCTG
GCCGCAGTCATCTTCATCTACTTTGCCGCCCTGTCTCCTGCCATCACCTTTGGGGGGCTGCTGGGAGAGA
AGACGCAGGACCTGATAGGGGTGTCGGAGCTGATTATGTCCACAGCGCTCCAGGGCGTGGTCTTCTGCCT
GCTGGGTGCCCAGCCCCTGTTGGTGATCGGCTTCTCAGGGCCCCTGCTGGTCTTTGAGGAGGCCTTCTTC
TCGTTCTGTAGCAGCAACCACCTGGAGTACCTGGTGGGCCGTGTGTGGATCGGCTTCTGGCTGGTGTTCC
TGGCCCTGCTCATGGTGGCCCTGGAGGGGAGCTTCCTGGTCCGCTTCGTCTCCCGCTTCACCCAGGAGAT
CTTCGCCTTCTTGATCTCACTCATCTTCATCTATGAGACCTTCTACAAGCTGGTGAAGATCTTCCAGGAG
CACCCCCTGCATGGCTGCTCAGCCTCCAACAGCTCAGAGGTGGACGGCGGTGAGAACATGACATGGGCCG
GGGCAAGACCCACGCTGGGGCCGGGCAACAGGAGCTTGGCTGGGCAGTCTGGGCAGGGGAAGCCCCGGGG
CCAGCCCAACACGGCCCTGCTGTCGCTGGTGCTCATGGCCGGCACCTTCTTCATCGCCTTCTTCCTGCGC
AAATTCAAGAACAGCCGGTTCTTTCCTGGCCGGATCCGGCGGGTGATTGGGGACTTTGGGGTGCCCATCG
CCATCCTCATCATGGTGCTTGTGGATTACAGTATTGAGGACACCTATACCCAGAAGCTGAGCGTTCCCAG
TGGATTCTCGGTGACTGCCCCAGAAAAGAGGGGCTGGGTCATCAACCCCCTGGGAGAGAAGAGCCCCTTC
CCTGTGTGGATGATGGTTGCCAGCCTGCTGCCCGCCATCCTGGTCTTCATTCTCATCTTCATGGAGACAC
AGATCACCACGCTCATCATCTCCAAGAAGGAGCGCATGCTGCAGAAGGGCTCCGGCTTCCACCTGGACCT
GCTGCTCATCGTGGCCATGGGCGGCATCTGTGCCCTCTTTGGCCTGCCCTGGTTGGCTGCTGCCACTGTC
CGCTCTGTCACTCACGCCAACGCGCTCACTGTCATGAGCAAGGCTGTGGCACCTGGGGACAAGCCCAAGA
TTCAGGAAGTCAAGGAGCAGCGGGTGACGGGGCTGCTGGTTGCCCTGCTTGTGGGCCTCTCCATAGTTAT
CGGGGATCTGCTCCGGCAGATCCCCCTGGCCGTGCTCTTTGGAATTTTCCTGTACATGGGAGTCACCTCC
CTTAACGGGATCCAGTTCTATGAGCGGCTGCATCTGCTGCTCATGCCGCCCAAACACCACCCAGATGTCA
CTTACGTCAAGAAGGTCCGGACCCTCCGTATGCACCTGTTCACGGCCCTGCAGCTGCTCTGCCTGGCCCT
GCTCTGGGCCGTCATGTCCACAGCTGCCTCCCTGGCCTTCCCCTTCATCCTCATCCTCACAGTGCCGCTC
CGCATGGTGGTGCTCACCCGTATCTTCACCGACCGAGAGATGAAATGTCTGGATGCTAACGAGGCAGAGC
CGGTGTTTGATGAGCGGGAGGGTGTGGACGAGTACAATGAGATGCCCATGCCTGTGTAG

Translation (1232 aa):
MDFLLRPQPEPESLGPGTPGFPEQEEDELHRTLGVERFEEILQEAGSRGGEEPGRSYGEEDFEYHRQSSH
HIHHPLSTHLPPDARRRKTPQGPGRKPRRRPGASPTGETPTIEEGEEDEDEASEAEGARALTQPSPVSTP
SSVQFFLQEDDSADRKAERTSPSSPAPLPHQEATPRASKGAQAGTQVEEAEAEAVAVASGTAGGDDGGAS
GRPLPKAQPGHRSYNLQERRRIGSMTGAEQALLPRVPTDEIEAQTLATADLDLMKSHRFEDVPGVRRHLV
RKNAKGSTQSGREGREPGPTPRARPRAPHKPHEVFVELNELLLDKNQEPQWRETARWIKFEEDVEEETER
WGKPHVASLSFRSLLELRRTLAHGAVLLDLDQQTLPGVAHQVVEQMVISDQIKAEDRANVLRALLLKHSH
PSDEKDFSFPRNISAGSLGSLLGHHHGQGAESDPHVTEPLMGGVPETRLEVERERELPPPAPPAGITRSK
SKHELKLLEKIPENAEATVVLVGCVEFLSRPTMAFVRLREAVELDAVLEVPVPVRFLFLLLGPSSANMDY
HEIGRSISTLMSDKQFHEAAYLADEREDLLTAINAFLDCSVVLPPSEVQGEELLRSVAHFQRQMLKKREE
QGRLLPTGAGLEPKSAQDKALLQMVEAAGAAEDDPLRRTGRPFGGLIRDVRRRYPHYLSDFRDALDPQCL
AAVIFIYFAALSPAITFGGLLGEKTQDLIGVSELIMSTALQGVVFCLLGAQPLLVIGFSGPLLVFEEAFF
SFCSSNHLEYLVGRVWIGFWLVFLALLMVALEGSFLVRFVSRFTQEIFAFLISLIFIYETFYKLVKIFQE
HPLHGCSASNSSEVDGGENMTWAGARPTLGPGNRSLAGQSGQGKPRGQPNTALLSLVLMAGTFFIAFFLR
KFKNSRFFPGRIRRVIGDFGVPIAILIMVLVDYSIEDTYTQKLSVPSGFSVTAPEKRGWVINPLGEKSPF
PVWMMVASLLPAILVFILIFMETQITTLIISKKERMLQKGSGFHLDLLLIVAMGGICALFGLPWLAAATV
RSVTHANALTVMSKAVAPGDKPKIQEVKEQRVTGLLVALLVGLSIVIGDLLRQIPLAVLFGIFLYMGVTS
LNGIQFYERLHLLLMPPKHHPDVTYVKKVRTLRMHLFTALQLLCLALLWAVMSTAASLAFPFILILTVPL
RMVVLTRIFTDREMKCLDANEAEPVFDEREGVDEYNEMPMPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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