NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS94209.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
94209.1 Public Homo sapiens 7 STRA8 24 110 108 CCDS HistoryNCBI Gene:346673Re-query CCDS DB by CCDS ID:94209.1Re-query CCDS DB by GeneID:346673See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 94209.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000662584.2 ENSP00000499386.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000662584.2Link to Ensembl Protein Viewer:ENSP00000499386.1Re-query CCDS DB by Nucleotide ID:ENST00000662584Re-query CCDS DB by Protein ID:ENSP00000499386
Original member Current member NCBI NM_001394401.1 NP_001381330.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001394401.1Link to Protein Sequence:NP_001381330.1Re-query CCDS DB by Nucleotide ID:NM_001394401Re-query CCDS DB by Protein ID:NP_001381330Link to BLAST:NP_001381330.1

Chromosomal Locations for CCDS 94209.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 135240525 135240716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135242781 135242856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135243326 135243410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135245288 135245527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135246417 135246702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135251796 135251869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135255114 135255225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135258418 135258492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1140 nt):
ATGGCAACCCCTGAAGAAAACAGCAATCCCCATGACAGAGCAACACCCCAGCTGCCAGCACAGCTGCAGG
AGCTTGAGCATCGGGTGGCCCGGAGACGGCTGTCCCAGGCCCGCCACCGAGCCACCCTGGCAGCGCTCTT
CAACAACCTCAGGAAGACAGTGTACTCTCAGTCTGATCTCATAGCCTCAAAGTGGCAGGTTCTGAATAAG
GCAAAGAGTCATATTCCAGAACTGGAGCAAACCCTGGATAATTTGCTGAAGCTGAAAGCATCCTTCAACC
TGGAAGATGGGCATGCAAGCAGCTTAGAGGAGGTCAAGAAAGAATATGCCAGCATGTATTCTGGAAATGA
CAGCCTGCTTTCAAACAGTTTTCCTCAGAATGGTTCCTCCCCTTGGTGCCCAACTGAGGCAGTCAGGAAG
GATGCTGAGGAGGAGGAAGATGAGGAAGAGGAAGATCAAGAAGAAGAGGAGGAGGAAGAAGAAGAGGAGG
AGGAGGAAGAGGAGGAAGAGGAAGAGGAGGAGGAGGAAGAGGAGAAAAAAGTGATCTTATACTCCCCAGG
AACTTTGTCGCCTGACCTCATGGAATTTGAACGGTATCTCAACTTTTACAAACAGACGATGGACCTTCTG
ACTGGCAGCGGGATCATTACCCCGCAGGAGGCGGCGCTGCCCATCGTCTCCGCGGCCATCTCCCACCTGT
GGCAGAACCTCTCGGAGGAGAGGAAGGCCAGCCTCCGGCAGGCCTGGGCGCAGAAGCACCGCGGCCCTGC
GACCCTGGCGGAGGCCTGCCGAGAGCCGGCCTGTGCCGAGGGCAGCGTGAAGGACAGCGGCGTGGACAGC
CAGGGGGCCAGCTGCTCGCTGGTCTCCACGCCCGAGGAGATCCTTTTTGAGGATGCCTTTGATGTGGCAA
GCTTCCTGGACAAAAGTGAGGTTCCGAGTACATCTAGCTCCAGTTCAGTGCTTGCCAGCTGCAACCCAGA
AAACCCAGAGGAGAAGTTTCAGCTCTATATGCAGATCATCAACTTTTTTAAAGGCCTTAGCTGTGCAAAC
ACTCAAGTAAAGCAGGAAGCATCCTTTCCCGTTGATGAAGAGATGATCATGTTGCAGTGCACAGAGACCT
TTGACGATGAAGATTTGTAA

Translation (379 aa):
MATPEENSNPHDRATPQLPAQLQELEHRVARRRLSQARHRATLAALFNNLRKTVYSQSDLIASKWQVLNK
AKSHIPELEQTLDNLLKLKASFNLEDGHASSLEEVKKEYASMYSGNDSLLSNSFPQNGSSPWCPTEAVRK
DAEEEEDEEEEDQEEEEEEEEEEEEEEEEEEEEEEEEEKKVILYSPGTLSPDLMEFERYLNFYKQTMDLL
TGSGIITPQEAALPIVSAAISHLWQNLSEERKASLRQAWAQKHRGPATLAEACREPACAEGSVKDSGVDS
QGASCSLVSTPEEILFEDAFDVASFLDKSEVPSTSSSSSVLASCNPENPEEKFQLYMQIINFFKGLSCAN
TQVKQEASFPVDEEMIMLQCTETFDDEDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH