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Report for CCDS5490.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5490.2 Public Homo sapiens 7 NUDCD3 24 110 108 CCDS HistoryNCBI Gene:23386Re-query CCDS DB by CCDS ID:5490.2Re-query CCDS DB by GeneID:23386See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 5490.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000355451.8 ENSP00000347626.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000355451.8Link to Ensembl Protein Viewer:ENSP00000347626.6Re-query CCDS DB by Nucleotide ID:ENST00000355451Re-query CCDS DB by Protein ID:ENSP00000347626
Original member Current member NCBI NM_015332.4 NP_056147.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015332.4Link to Protein Sequence:NP_056147.2Re-query CCDS DB by Nucleotide ID:NM_015332Re-query CCDS DB by Protein ID:NP_056147Link to BLAST:NP_056147.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056147.2 361 Q8IVD9 361 100% 0 0

Chromosomal Locations for CCDS 5490.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 44386011 44386121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44392297 44392485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44404440 44404583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44427571 44427703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44484968 44485284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44490409 44490600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1086 nt):
ATGGAGACAGGGGCGGCCGAGCTGTATGACCAGGCCCTTTTGGGCATCCTGCAGCACGTGGGCAACGTCC
AGGATTTCCTGCGCGTTCTCTTTGGCTTCCTCTACCGCAAGACAGACTTCTATCGCTTGCTGCGCCACCC
ATCGGACCGCATGGGCTTCCCGCCCGGGGCCGCGCAGGCCTTGGTGCTGCAGGTATTCAAAACCTTTGAC
CACATGGCCCGTCAGGATGATGAGAAGAGAAGGCAGGAACTTGAAGAGAAAATCAGAAGAAAGGAAGAGG
AAGAGGCCAAGACTGTGTCAGCTGCTGCAGCTGAGAAGGAGCCAGTCCCAGTTCCAGTCCAGGAAATAGA
GATTGACTCCACCACAGAATTGGATGGGCATCAGGAAGTAGAGAAAGTGCAGCCTCCAGGCCCTGTGAAG
GAAATGGCCCATGGTTCACAGGAGGCAGAAGCTCCAGGAGCAGTTGCTGGTGCTGCTGAAGTCCCTAGGG
AACCACCAATTCTTCCCAGGATTCAGGAGCAGTTCCAGAAAAATCCCGACAGTTACAATGGTGCTGTCCG
AGAGAACTACACCTGGTCACAGGACTATACTGACCTGGAGGTCAGGGTGCCAGTACCCAAGCACGTGGTG
AAGGGAAAGCAGGTCTCAGTGGCCCTTAGCAGCAGCTCCATTCGTGTGGCCATGCTGGAGGAAAATGGGG
AGCGCGTCCTCATGGAAGGGAAGCTCACCCACAAGATCAACACTGAGAGTTCTCTCTGGAGTCTCGAGCC
CGGGAAGTGCGTTTTGGTGAACCTGAGCAAGGTGGGCGAGTATTGGTGGAACGCCATCCTGGAGGGAGAA
GAGCCCATCGACATTGACAAGATCAACAAGGAGCGCTCCATGGCCACCGTGGATGAGGAGGAACAGGCGG
TGTTGGACAGGCTTACCTTTGACTACCACCAGAAGCTGCAGGGCAAGCCACAGAGCCATGAGCTGAAAGT
CCATGAGATGCTGAAGAAGGGGTGGGATGCTGAAGGTTCTCCCTTCCGAGGCCAGCGATTCGACCCTGCC
ATGTTCAACATCTCCCCGGGGGCTGTGCAGTTTTAA

Translation (361 aa):
METGAAELYDQALLGILQHVGNVQDFLRVLFGFLYRKTDFYRLLRHPSDRMGFPPGAAQALVLQVFKTFD
HMARQDDEKRRQELEEKIRRKEEEEAKTVSAAAAEKEPVPVPVQEIEIDSTTELDGHQEVEKVQPPGPVK
EMAHGSQEAEAPGAVAGAAEVPREPPILPRIQEQFQKNPDSYNGAVRENYTWSQDYTDLEVRVPVPKHVV
KGKQVSVALSSSSIRVAMLEENGERVLMEGKLTHKINTESSLWSLEPGKCVLVNLSKVGEYWWNAILEGE
EPIDIDKINKERSMATVDEEEQAVLDRLTFDYHQKLQGKPQSHELKVHEMLKKGWDAEGSPFRGQRFDPA
MFNISPGAVQF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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