NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS5452.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5452.1 Public Homo sapiens 7 NME8 24 110 108 CCDS HistoryNCBI Gene:51314Re-query CCDS DB by CCDS ID:5452.1Re-query CCDS DB by GeneID:51314See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5452.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000199447.9 ENSP00000199447.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000199447.9Link to Ensembl Protein Viewer:ENSP00000199447.4Re-query CCDS DB by Nucleotide ID:ENST00000199447Re-query CCDS DB by Protein ID:ENSP00000199447
Original member Current member EBI ENST00000440017.5 ENSP00000397063.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000440017.5Link to Ensembl Protein Viewer:ENSP00000397063.1Re-query CCDS DB by Nucleotide ID:ENST00000440017Re-query CCDS DB by Protein ID:ENSP00000397063
Original member Current member NCBI NM_016616.5 NP_057700.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016616.5Link to Protein Sequence:NP_057700.3Re-query CCDS DB by Nucleotide ID:NM_016616Re-query CCDS DB by Protein ID:NP_057700Link to BLAST:NP_057700.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057700.3 588 Q8N427 588 100% 0 0

Chromosomal Locations for CCDS 5452.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 37850267 37850299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 37850378 37850435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 37850629 37850735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 37857274 37857345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 37862028 37862144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 37863396 37863462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 37864348 37864421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 37865525 37865617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 37867702 37867898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 37876832 37877007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 37884303 37884447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 37885145 37885252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 37888277 37888428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 37894466 37894610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 37896870 37897092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1767 nt):
ATGGCAAGCAAAAAACGAGAAGTCCAGTTACAGACAGTCATCAATAATCAAAGCCTGTGGGATGAGATGT
TGCAGAACAAAGGCTTAACAGTGATTGATGTTTACCAAGCCTGGTGTGGACCTTGCAGAGCAATGCAACC
TTTATTCAGAAAATTGAAAAATGAACTGAACGAAGACGAAATTCTGCATTTTGCTGTCGCAGAAGCTGAC
AACATTGTGACTTTGCAGCCATTTAGAGATAAATGTGAACCTGTTTTTCTCTTTAGTGTTAATGGCAAAA
TTATCGAAAAGATTCAGGGTGCAAATGCACCGCTTGTTAATAAAAAAGTTATTAATTTGATCGATGAGGA
GAGAAAAATTGCAGCAGGTGAAATGGCTCGACCTCAGTATCCTGAAATTCCATTAGTAGACTCAGATTCA
GAAGTTAGTGAAGAATCACCATGTGAAAGTGTTCAGGAATTATACAGTATTGCTATTATCAAACCGGATG
CTGTGATTAGTAAAAAAGTTCTAGAAATTAAAAGAAAAATTACCAAAGCTGGATTTATTATAGAAGCAGA
GCATAAGACAGTGCTCACTGAAGAACAAGTTGTCAACTTCTATAGTCGAATAGCAGACCAGTGTGACTTC
GAAGAGTTTGTCTCTTTTATGACAAGTGGCTTAAGCTATATTCTAGTTGTATCTCAAGGAAGTAAACACA
ATCCTCCCTCTGAAGAAACCGAACCACAGACTGACACCGAACCTAACGAACGATCTGAGGATCAACCTGA
GGTCGAAGCCCAGGTTACACCTGGAATGATGAAGAACAAACAAGACAGTTTACAAGAATATCTGGAAAGA
CAACATTTAGCTCAGCTCTGTGACATTGAAGAGGATGCAGCTAATGTTGCTAAGTTCATGGATGCTTTCT
TCCCCGATTTTAAAAAAATGAAAAGCATGAAATTAGAAAAGACATTGGCATTACTTCGACCAAATCTCTT
TCATGAAAGGAAAGATGATGTTTTGCGTATTATTAAAGATGAAGACTTCAAAATACTGGAGCAAAGACAA
GTAGTATTATCGGAAAAAGAAGCACAAGCACTGTGCAAGGAATATGAAAATGAAGACTATTTTAATAAAC
TTATAGAAAACATGACCAGTGGTCCATCTCTAGCCCTTGTTTTATTGAGAGACAATGGCTTGCAATACTG
GAAACAATTACTGGGACCAAGAACTGTTGAAGAAGCCATTGAATATTTTCCAGAGAGTTTATGTGCACAG
TTTGCGATGGACAGTTTGCCGGTCAACCAGTTGTATGGCAGCGATTCATTAGAAACCGCTGAAAGGGAAA
TACAGCATTTCTTTCCTCTTCAAAGCACTTTAGGCTTGATTAAACCTCATGCAACAAGTGAACAAAGAGA
GCAGATCCTGAAGATAGTTAAGGAGGCTGGATTTGATCTGACACAGGTGAAGAAAATGTTCCTAACTCCT
GAGCAAATAGAGAAAATTTATCCAAAAGTAACAGGAAAAGACTTTTATAAAGATTTATTGGAAATGTTAT
CTGTGGGTCCATCTATGGTCATGATTCTGACCAAGTGGAATGCTGTTGCAGAATGGAGACGATTGATGGG
CCCAACAGACCCAGAAGAAGCAAAATTACTTTCCCCTGACTCCATCCGAGCCCAGTTTGGAATAAGTAAA
TTGAAAAACATTGTCCATGGAGCATCTAACGCCTATGAAGCAAAAGAGGTTGTTAATAGACTCTTTGAGG
ATCCTGAGGAAAACTAA

Translation (588 aa):
MASKKREVQLQTVINNQSLWDEMLQNKGLTVIDVYQAWCGPCRAMQPLFRKLKNELNEDEILHFAVAEAD
NIVTLQPFRDKCEPVFLFSVNGKIIEKIQGANAPLVNKKVINLIDEERKIAAGEMARPQYPEIPLVDSDS
EVSEESPCESVQELYSIAIIKPDAVISKKVLEIKRKITKAGFIIEAEHKTVLTEEQVVNFYSRIADQCDF
EEFVSFMTSGLSYILVVSQGSKHNPPSEETEPQTDTEPNERSEDQPEVEAQVTPGMMKNKQDSLQEYLER
QHLAQLCDIEEDAANVAKFMDAFFPDFKKMKSMKLEKTLALLRPNLFHERKDDVLRIIKDEDFKILEQRQ
VVLSEKEAQALCKEYENEDYFNKLIENMTSGPSLALVLLRDNGLQYWKQLLGPRTVEEAIEYFPESLCAQ
FAMDSLPVNQLYGSDSLETAEREIQHFFPLQSTLGLIKPHATSEQREQILKIVKEAGFDLTQVKKMFLTP
EQIEKIYPKVTGKDFYKDLLEMLSVGPSMVMILTKWNAVAEWRRLMGPTDPEEAKLLSPDSIRAQFGISK
LKNIVHGASNAYEAKEVVNRLFEDPEEN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH