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Report for CCDS5353.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5353.1 Public Homo sapiens 7 INTS15 24 110 108 CCDS HistoryNCBI Gene:79034Re-query CCDS DB by CCDS ID:5353.1Re-query CCDS DB by GeneID:79034See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5353.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000344417.10 ENSP00000340220.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000344417.10Link to Ensembl Protein Viewer:ENSP00000340220.5Re-query CCDS DB by Nucleotide ID:ENST00000344417Re-query CCDS DB by Protein ID:ENSP00000340220
Original member Current member NCBI NM_024067.4 NP_076972.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024067.4Link to Protein Sequence:NP_076972.2Re-query CCDS DB by Nucleotide ID:NM_024067Re-query CCDS DB by Protein ID:NP_076972Link to BLAST:NP_076972.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_076972.2 449 Q96N11-1 449 100% 0 0

Chromosomal Locations for CCDS 5353.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 6590284 6590475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6591646 6591867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6594435 6594600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6599829 6600356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6602101 6602140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6607960 6608161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1350 nt):
ATGAGCGACATCCGCCACTCGCTGCTGCGCCGCGATGCGCTGAGCGCCGCCAAGGAGGTGTTGTACCACC
TGGACATCTACTTCAGCAGCCAGCTGCAGAGCGCGCCGCTGCCCATCGTGGACAAGGGCCCCGTGGAGCT
GCTGGAGGAGTTCGTGTTCCAGGTGCCCAAGGAGCGCAGCGCGCAGCCCAAGAGACTGAATTCCCTTCAG
GAGCTTCAACTTCTTGAAATCATGTGCAATTATTTCCAGGAGCAAACCAAGGACTCTGTTCGGCAGATTA
TTTTTTCATCCCTTTTCAGCCCTCAAGGGAACAAAGCCGATGACAGCCGGATGAGCTTGTTGGGAAAACT
GGTCTCCATGGCGGTGGCTGTGTGTCGAATCCCGGTGTTGGAGTGTGCTGCCTCCTGGCTTCAGCGGACG
CCCGTGGTTTACTGTGTGAGGTTAGCCAAGGCCCTTGTAGATGACTACTGCTGTTTGGTGCCGGGATCCA
TTCAGACGCTGAAGCAGATATTCAGTGCCAGCCCGAGATTCTGCTGCCAGTTCATCACCTCCGTTACCGC
GCTCTATGACCTGTCATCAGATGACCTCATTCCACCTATGGACTTGCTTGAAATGATTGTCACCTGGATT
TTTGAGGACCCAAGGTTGATTCTCATCACTTTTTTAAATACTCCGATTGCGGCCAATCTGCCAATAGGAT
TCTTAGAGCTCACCCCGCTCGTTGGATTGATCCGCTGGTGCGTGAAGGCACCCCTGGCTTATAAAAGGAA
AAAGAAGCCCCCCTTATCCAATGGCCATGTCAGCAACAAGGTCACAAAGGACCCGGGCGTGGGGATGGAC
AGAGACTCCCACCTCTTGTACTCAAAACTCCACCTCAGCGTCCTGCAAGTGCTCATGACGCTGCAGCTGC
ACCTGACCGAGAAGAATCTGTATGGGCGCCTGGGGCTGATCCTCTTCGACCACATGGTCCCGCTGGTAGA
GGAGATCAACAGGTTGGCGGATGAACTGAACCCCCTCAACGCCTCCCAGGAGATTGAGCTCTCGCTGGAC
CGGCTGGCGCAGGCTCTGCAGGTGGCCATGGCCTCAGGAGCTCTGCTGTGCACGAGAGATGACCTGAGAA
CCTTGTGCTCCAGGCTGCCCCATAATAACCTCCTCCAGCTGGTGATCTCGGGTCCCGTGCAGCAGTCGCC
TCACGCCGCGCTCCCCCCGGGGTTCTACCCCCACATCCACACGCCCCCGCTGGGCTACGGGGCTGTCCCG
GCCCACCCCGCCGCCCACCCCGCCCTGCCCACGCATCCCGGCCACACCTTCATCTCCGGCGTGACCTTTC
CCTTCAGGCCCATCCGCTAG

Translation (449 aa):
MSDIRHSLLRRDALSAAKEVLYHLDIYFSSQLQSAPLPIVDKGPVELLEEFVFQVPKERSAQPKRLNSLQ
ELQLLEIMCNYFQEQTKDSVRQIIFSSLFSPQGNKADDSRMSLLGKLVSMAVAVCRIPVLECAASWLQRT
PVVYCVRLAKALVDDYCCLVPGSIQTLKQIFSASPRFCCQFITSVTALYDLSSDDLIPPMDLLEMIVTWI
FEDPRLILITFLNTPIAANLPIGFLELTPLVGLIRWCVKAPLAYKRKKKPPLSNGHVSNKVTKDPGVGMD
RDSHLLYSKLHLSVLQVLMTLQLHLTEKNLYGRLGLILFDHMVPLVEEINRLADELNPLNASQEIELSLD
RLAQALQVAMASGALLCTRDDLRTLCSRLPHNNLLQLVISGPVQQSPHAALPPGFYPHIHTPPLGYGAVP
AHPAAHPALPTHPGHTFISGVTFPFRPIR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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