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Report for CCDS34491.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34491.1 Public Homo sapiens 6 UBE3D 24 110 108 CCDS HistoryNCBI Gene:90025Re-query CCDS DB by CCDS ID:34491.1Re-query CCDS DB by GeneID:90025See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34491.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000369747.8 ENSP00000358762.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000369747.8Link to Ensembl Protein Viewer:ENSP00000358762.3Re-query CCDS DB by Nucleotide ID:ENST00000369747Re-query CCDS DB by Protein ID:ENSP00000358762
Original member Current member NCBI NM_198920.3 NP_944602.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_198920.3Link to Protein Sequence:NP_944602.1Re-query CCDS DB by Nucleotide ID:NM_198920Re-query CCDS DB by Protein ID:NP_944602Link to BLAST:NP_944602.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_944602.1 389 Q7Z6J8 389 100% 0 0

Chromosomal Locations for CCDS 34491.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 82893022 82893042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 82957312 82957450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83018973 83019136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83022453 83022561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83023969 83024038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83038416 83038485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83044428 83044659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83054148 83054238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83057826 83058022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83065642 83065718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1170 nt):
ATGGCGGCTTCTGCGGCGGAGACGCGCGTGTTTCTGGAGGTGCGGGGACAGCTGCAGAGCGCGCTTCTGA
TCCTGGGAGAACCGAAAGAAGGAGGTATGCCCATGAATATTTCCATAATGCCATCTTCACTCCAGATGAA
AACCCCTGAAGGCTGCACAGAAATCCAGCTTCCAGCAGAGGTCAGGCTTGTACCTTCCTCTTGCCGTGGG
CTACAGTTTGTTGTTGGAGATGGACTGCACCTGCGACTGCAGACGCAAGCAAAATTAGGCACAAAACTGA
TTTCAATGTTTAATCAAAGCTCGCAAACCCAAGAATGTTGCACGTTTTATTGCCAATCCTGCGGTGAAGT
CATAATAAAAGACAGGAAGCTCCTCAGGGTGCTCCCACTGCCGAGTGAGAACTGGGGAGCTCTAGTTGGA
GAATGGTGTTGTCATCCTGACCCCTTTGCTAATAAATCACTTCATCCGCAAGAGAATGACTGTTTTATTG
GAGACTCTTTCTTCTTGGTGAATTTAAGAACCAGTTTGTGGCAGCAAAGACCTGAACTATCCCCAGTGGA
GATGTGCTGTGTTTCTTCTGACAACCATTGTAAATTGGAACCAAAGGCAAATACCAAAGTAATTTGTAAG
CGTTGCAAGGTAATGTTGGGAGAGACCGTGTCATCAGAAACCACCAAGTTTTATATGACAGAGATAATTA
TTCAGTCATCTGAGAGGAGTTTTCCTATCATACCAAGGTCTTGGTTTGTCCAGAGCGTGATCGCCCAGTG
TCTGGTGCAGCTCTCCTCTGCTAGAAGCACTTTTAGATTCACGATTCAAGGTCAGGATGACAAAGTGTAT
ATCTTGCTATGGCTTTTAAATTCAGACAGTTTGGTGATTGAATCTTTGAGAAATTCCAAATATATCAAAA
AATTCCCCTTGTTGGAAAACACATTCAAAGCCGATTCTAGTTCTGCCTGGAGTGCTGTCAAGGTCCTCTA
CCAGCCATGCATCAAAAGCAGGAATGAAAAACTTGTCAGCTTGTGGGAAAGTGACATCAGCGTCCACCCG
CTAACCCTGCCCTCTGCAACCTGCTTGGAGCTGCTGTTGATATTGTCAAAGAGTAATGCCAATCTGCCTT
CATCCCTTCGCCGTGTGAATTCCTTTCAGGTGGCCTTTTTGAAGATGTAA

Translation (389 aa):
MAASAAETRVFLEVRGQLQSALLILGEPKEGGMPMNISIMPSSLQMKTPEGCTEIQLPAEVRLVPSSCRG
LQFVVGDGLHLRLQTQAKLGTKLISMFNQSSQTQECCTFYCQSCGEVIIKDRKLLRVLPLPSENWGALVG
EWCCHPDPFANKSLHPQENDCFIGDSFFLVNLRTSLWQQRPELSPVEMCCVSSDNHCKLEPKANTKVICK
RCKVMLGETVSSETTKFYMTEIIIQSSERSFPIIPRSWFVQSVIAQCLVQLSSARSTFRFTIQGQDDKVY
ILLWLLNSDSLVIESLRNSKYIKKFPLLENTFKADSSSAWSAVKVLYQPCIKSRNEKLVSLWESDISVHP
LTLPSATCLELLLILSKSNANLPSSLRRVNSFQVAFLKM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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