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Report for CCDS43808.3 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43808.3 Public Homo sapiens 9 SPATA31A1 24 110 108 CCDS HistoryNCBI Gene:647060Re-query CCDS DB by CCDS ID:43808.3See the combined annotation on chromosome 9 in Sequence Viewer

Public Note for CCDS 43808.2
The coding region has been updated to shorten the N-terminus to one that is more supported by conservation.

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 43808.3

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000377647.6 ENSP00000366875.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000377647.6Link to Ensembl Protein Viewer:ENSP00000366875.5Re-query CCDS DB by Nucleotide ID:ENST00000377647Re-query CCDS DB by Protein ID:ENSP00000366875
Original member Current member NCBI NM_001085452.4 NP_001078921.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001085452.4Link to Protein Sequence:NP_001078921.3Re-query CCDS DB by Nucleotide ID:NM_001085452Re-query CCDS DB by Protein ID:NP_001078921Link to BLAST:NP_001078921.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001078921.3 1347 Q5TZJ5 1347 100% 0 0

Chromosomal Locations for CCDS 43808.3

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 39355731 39355919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 39357132 39357189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 39357758 39357818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 39358074 39361809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4044 nt):
ATGGAGAATCTTCCCTTTCCTTTAAAATTACTTAGTGCCTCATCGCTAAACGCCCCCAGTTCCACACCAT
GGGTGTTGGATATCTTCCTCACTTTGGTGTTTGCCCTGGGGTTCTTCTTCCTATTACTCCCCTACTTATC
TTACTTCCGTTGTGATGACCCACCCTCACCATCGCCTGGGAAGAGAAAGTGTCCAGTAGGGCGGAGGCGG
AGGCCCAGAGGCAGGATGAAAAACCACAGTCTGAGAGCTGGTAGAGAGTGCCCGAGAGGCCTGCAGGAGA
CTTCGGACCTGCTTTCACAACTGCAGAGCCTCCTGGGGCCACACCTTGACAAAGGTGACTTTGGTCAGCT
CTCCGGTCCAGACCCCCCAGGTGAAGTGGGCGAAAGAGCACCTGATGGAGCCTCCCAGTCCTCTCATGAG
CCTATGGAAGATGCTGCTCCCATTCTCTCCCCGTTAGCTTCCCCGGATCCTCAAGCCAAGCATCCTCAGG
ATCTGGCCTCCACCCCATCACCAGGCCCAATGACCACCTCAGTCTCCTCCCTAAGTGCCTCCCAGCCACC
AGAACCTTCCCTTCCCCTAGAACACCCCTCACCCGAGCCACCTGCACTTTTCCCTCACCCACCACACACC
CCTGATCCTCTGGCCTGCTCTCCGCCTCCTCCAAAAGGCTTCACTGCTCCTCCCCTGCGGGACTCCACAC
TGATAACTCCATCTCACTGTGACTCAGTGGCACTTCCACTGGGCACCGTCCCTCAAAGCTTGTCTCCACA
TGAGGATTTGGTGGCTTCTGTCCCAGCCATCTCAGGCCTTGGTGGCTCAAACAGTCATGTTTCTGCCTCC
TCCCGGTGGCAGGAGACTGCCAGAACCTCGTGCGCCTTTAACTCATCAGTCCAGCAAGATCATCTTTCCC
GCCACCCACCAGAGACCTACCAGATGGAAGCTGGTAGCCTGTTTTTGCTCAGCTCTGATGGCCAGAATGC
CGTGGGGATACAAGTCACAGAAACAGCCAAGGTCAACATTTGGGAAGAAAAAGAAAATGTTGGATCATTT
ACAGATCGAATGACCCCAGAAAAGCACTTAAATTCTTTGCGGAATTTGGCTAAATCATTGGATGCTGAGC
AGGACACCACAAACCCAAAACCCTTCTGGAACATGGGAGAGAACTCGAAACAGCTGCCCGGACCTCAGAA
GCTCTCAGATCCTAGGCTCTGGCAGGAAAGTTTTTGGAAGAATTATAGCCAGCTTTTCTGGGGCCTCCCC
TCTCTGCACAGCGAGTCCCTGGTGGCTAACGCCTGGGTAACTGACAGGTCTTATACTTTACAGTCTCCTC
CTTTCTTGTTCAATGAAATGTCCAATGTCTGCCCAATTCAAAGGGAGACTACAATGTCCCCACTGCTTTT
CCAGGCCCAGCCCCCGTCCCATCTGGGGCCCGAGTGCCAACCCTTTATTTCATCCACACCCCAATTCCGG
CCCACACCTATGGCTCAGGCCGAGGCTCAGGCCCATCTTCAATCTTCTTTCCCAGTCCTATCTCCTGCTT
TTCCATCCCTGATTAAGAACACTGGAGTAGCTTGCCCTGCATCGCAGAATAAAGTGCAAGCTCTCTCCCT
ACCTGAAACTCAGCACCCTGAATGGCCTTTGTTGAGGAGACAACTAGAAGGTAGGTTGGCTTTACCCTCT
AGGGTCCAAAAATCTCAGGACGTCTTTAGTGTCTCCACTCCTAACCTTCCCCAGGAAAGTTTGACATCCA
TTCTGCCTGAGAACTTTCCAGTCAGTCCTGAACTCCGGAGACAACTGGAGCAACACATAAAAAAGTGGAT
CATCCAACACTGGGGCAACCTGGGAAGGATCCAAGAGTCTCTGGATCTGATGCAGCTTCGGGACGAATCA
CCAGGGACAAGTCAGGCCAAGGGCAAACCCAGTCCCTGGCAGTCCTCCATGTCCACAGGTGAAAGCAGCA
AGGAGGCACAGAAGGTGAAGTTCCAGCTAGAGAGGGACCCGTGCCCACATCTGGGGCAAATTCTGGGTGA
GACCCCACAAAATCTATCCAGGGACATGAAAAGCTTCCCACGGAAGGTTCTGGGGGTGACTTCTGAGGAG
TCGGAAAGGAACTTGAGGAAGCCCTTGAGGAGTGACTCGGGAAGTGATTTATTAAGATGCACAGAGAGGA
CTCATATAGAAAACATCCTGAAAGCCCACATGGGCAGGAACTTGGGCCAGACCAACGAGGGCTTGATCCC
CGTGCGTGTGCGTCGATCCTGGCTTGCTGTCAACCAGGCTCTTCCCGTGTCCAACACCCATGTGAAAACC
AGCAATCTAGCAGCCCCGAAAAGTGGGAAAGCCTGTGTGAACACAGCCCAGGTGCTTTCCTTCCTCGAGC
CGTGTACTCAGCAGGGGTTGGGAGCCCATATTGTGAGGTTTTGGGCCAAACACAGGTGGGGTCTACCCCT
CAGGGTCCTCAAGCCCATTCAGTGCTTTAAACTGGAAAAGGTTTCATCCTTGTCCCTTACACAGCTTGCT
GGTCCCTCCTCAGCCACCTGTGAATCTGGGGCTGGCTCAGAAGTTGAGGTGGACATGTTCCTTAGAAAGC
CACCAATGGCAAGTCTGAGAAAGCAGGTGCTGACCAAAGCATCTGATCACATGCCAGAGAGTCTTCTGGC
CTCCTCACCTGCATGGAAGCAGTTCCAGAGGGCACCGCGAGGAATCCCATCTTGGAATGATCATGGGCCC
TTGAAGCCTCCTCCAGCTGGACAGGAGGGCAGGTGGCCATCTAAGCCCCTCACGTACAGCCTCACAGGCA
GCACCCAGCAGAGCAGGAGCTTAGGAGCCCAATCTTCAAAGGCTGGAGAGACAAGGGAGGCAGTGCCACA
ATGCAGAGTCCCCTTGGAAACCTGTATGCTGGCAAACCTCCAAGCCACAAGTGAGGATATGCATGGTTTC
GAGGCTCCAGGGACCAGCAAAAGCTCTCTACACCCTAGAGTGTCTGTCTCCCAAGATCCAAGAAAGCTGT
GTCTTATGGAGGAGGTTGTTAATGAATTTGAGCCTGGAATGGCCACAAAGTCAGAGACCCAGCCTCAAGT
TTGTGCCGCTGTTGTGCTCCTTCCAGATGGGCAAGCATCTGTTGTGCCCCACGCTTCAGAGAATTTGGTT
TCTCAAGTGCCCCAGGGCCATCTCCAGAGCATGCCTGCTGGGAACATGCGGGCTTCCCAGGAGCTACATG
ACCTTATGGCAGCCAGAAGGAGCAAACTGGTGCACGAGGAGCCCAGAAACCCAAACTGTCAAGGCTCATG
CAAGAACCAAAGGCCAATGTTTCCCCCTATTCACAAGAGTGAGAAGTCTAGGAAGCCCAACTTAGAAAAA
CATGAAGAAAGGCTTGAAGGATTGAGGACTCCTCAACTTACCCCAGTCAGGAAAACAGAAGACACCCATC
AGGATGAAGGCGTCCAGCTACTGCCATCAAAGAAACAGCCTCCTTCAGTAAGCCACTTTGGAGGAAACAT
CAAGCAATTTTTTCAGTGGATTTTTTCAAAGAAAAAAAGCAAGCCAGCACCAGTCACTGCTGAGAGCCAA
AAAACAGTGAAAAACAGATCATGTGTGTACAGCAGCAGTGCTGAAGCTCAGGGTCTCATGACGGCAGTTG
GACAAATGCTGGACGAGAAAATGTCACTTTGCCATGCGCGCCATGCCTCGAAGGTAAATCAGCACAAACA
GAAGTTTCAAGCCCCAGTCTGTGGGTTTCCCTGCAACCACAGGCACCTCTTCTACTCAGAACACGGCAGA
ATACTGAGCTATGCAGCCAGCAGTCAACAAGCCACTCTCAAGAGCCAGGGTTGTCCCAACAGAGACAGGC
AAATCAGAAATCAACAGCCCTTGAAAAGTGTGCGGTGCAACAATGAGCAATGGGGCCTGCGACATCCCCA
AATCTTGCACCCCAAGAAAGCTGTATCCCCAGTCAGTCCCCTTCAGCACTGGCCGAAGACATCCGGTGCC
TCTAGCCACCATCACCACTGTCCAAGGCACTGTCTTCTTTGGGAAGGTATCTGA

Translation (1347 aa):
MENLPFPLKLLSASSLNAPSSTPWVLDIFLTLVFALGFFFLLLPYLSYFRCDDPPSPSPGKRKCPVGRRR
RPRGRMKNHSLRAGRECPRGLQETSDLLSQLQSLLGPHLDKGDFGQLSGPDPPGEVGERAPDGASQSSHE
PMEDAAPILSPLASPDPQAKHPQDLASTPSPGPMTTSVSSLSASQPPEPSLPLEHPSPEPPALFPHPPHT
PDPLACSPPPPKGFTAPPLRDSTLITPSHCDSVALPLGTVPQSLSPHEDLVASVPAISGLGGSNSHVSAS
SRWQETARTSCAFNSSVQQDHLSRHPPETYQMEAGSLFLLSSDGQNAVGIQVTETAKVNIWEEKENVGSF
TDRMTPEKHLNSLRNLAKSLDAEQDTTNPKPFWNMGENSKQLPGPQKLSDPRLWQESFWKNYSQLFWGLP
SLHSESLVANAWVTDRSYTLQSPPFLFNEMSNVCPIQRETTMSPLLFQAQPPSHLGPECQPFISSTPQFR
PTPMAQAEAQAHLQSSFPVLSPAFPSLIKNTGVACPASQNKVQALSLPETQHPEWPLLRRQLEGRLALPS
RVQKSQDVFSVSTPNLPQESLTSILPENFPVSPELRRQLEQHIKKWIIQHWGNLGRIQESLDLMQLRDES
PGTSQAKGKPSPWQSSMSTGESSKEAQKVKFQLERDPCPHLGQILGETPQNLSRDMKSFPRKVLGVTSEE
SERNLRKPLRSDSGSDLLRCTERTHIENILKAHMGRNLGQTNEGLIPVRVRRSWLAVNQALPVSNTHVKT
SNLAAPKSGKACVNTAQVLSFLEPCTQQGLGAHIVRFWAKHRWGLPLRVLKPIQCFKLEKVSSLSLTQLA
GPSSATCESGAGSEVEVDMFLRKPPMASLRKQVLTKASDHMPESLLASSPAWKQFQRAPRGIPSWNDHGP
LKPPPAGQEGRWPSKPLTYSLTGSTQQSRSLGAQSSKAGETREAVPQCRVPLETCMLANLQATSEDMHGF
EAPGTSKSSLHPRVSVSQDPRKLCLMEEVVNEFEPGMATKSETQPQVCAAVVLLPDGQASVVPHASENLV
SQVPQGHLQSMPAGNMRASQELHDLMAARRSKLVHEEPRNPNCQGSCKNQRPMFPPIHKSEKSRKPNLEK
HEERLEGLRTPQLTPVRKTEDTHQDEGVQLLPSKKQPPSVSHFGGNIKQFFQWIFSKKKSKPAPVTAESQ
KTVKNRSCVYSSSAEAQGLMTAVGQMLDEKMSLCHARHASKVNQHKQKFQAPVCGFPCNHRHLFYSEHGR
ILSYAASSQQATLKSQGCPNRDRQIRNQQPLKSVRCNNEQWGLRHPQILHPKKAVSPVSPLQHWPKTSGA
SSHHHHCPRHCLLWEGI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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