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Report for CCDS78080.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78080.1 Public Homo sapiens 5 SOX30 24 110 108 CCDS HistoryNCBI Gene:11063Re-query CCDS DB by CCDS ID:78080.1Re-query CCDS DB by GeneID:11063See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78080.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000519442.1 ENSP00000427984.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000519442.1Link to Ensembl Protein Viewer:ENSP00000427984.1Re-query CCDS DB by Nucleotide ID:ENST00000519442Re-query CCDS DB by Protein ID:ENSP00000427984
Original member Current member NCBI NM_001308165.2 NP_001295094.1 Accepted alive Link to Nucleotide Sequence:NM_001308165.2Link to Protein Sequence:NP_001295094.1Re-query CCDS DB by Nucleotide ID:NM_001308165Re-query CCDS DB by Protein ID:NP_001295094Link to BLAST:NP_001295094.1

Chromosomal Locations for CCDS 78080.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 157626340 157626721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 157638230 157638722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 157646637 157646816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 157648657 157648896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 157667798 157667849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1347 nt):
ATGGAGAAATGTTGTAGAGGGAAGGAACAAAGTCTACTGTGCATCCAGCAAGGCATACCAGATACTCCCT
TCAGTAAGGACAGAAATGGTCATGTGAAGCGACCCATGAACGCATTTATGGTTTGGGCAAGGATCCACCG
ACCAGCACTAGCCAAAGCTAACCCAGCAGCCAACAATGCAGAAATCAGTGTCCAGCTTGGGTTAGAGTGG
AACAAACTTAGTGAAGAACAAAAGAAACCCTATTACGATGAAGCACAAAAGATTAAGGAAAAGCACAGAG
AGGAATTTCCTGGTTGGGTTTATCAGCCTCGTCCAGGGAAGCGAAAACGATTCCCTCTAAGTGTTTCCAA
TGTATTTTCTGGTACCACACAGAATATCATCTCTACAAATCCTACAACAGTTTATCCTTACCGCTCACCT
ACGTACTCTGTGGTAATTCCCAGCCTACAGAATCCCATCACTCATCCAGTTGGTGAAACCTCACCTGCTA
TCCAGCTGCCCACACCTGCAGTCCAGAGCCCAAGCCCTGTCACACTTTTCCAGCCCAGCGTCTCCAGTGC
TGCTCAGGTGGCTGTCCAGGATCCAAGTCTACCTGTCTATCCAGCACTCCCACCCCAACGCTTTACTGGG
CCTTCCCAAACAGACACTCATCAGCTGCATTCTGAAGCCACTCACACTGTGAAGCAACCCACTCCTGTCT
CTCTAGAGAGCGCCAACAGGATTTCAAGTAGTGCAAGTACTGCCCATGCCAGATTTGCAACTTCGACCAT
CCAACCTCCTAGGGAGTATTCCAGCGTTTCCCCTTGTCCCAGAAGTGCTCCAATCCCCCAGGCTTCTCCC
ATTCCACACCCACATGTCTACCAGCCCCCTCCCCTTGGCCATCCAGCCACACTGTTCGGGACACCACCAA
GATTCTCTTTTCATCACCCTTACTTCCTACCCGGACCTCACTACTTCCCATCAAGTACATGCCCTTACAG
TCGGCCTCCCTTTGGCTATGGAAATTTTCCGAGTTCAATGCCAGAATGCCTTAGTTATTATGAAGACAGG
TACCCAAAACATGAGGGTATCTTTTCAACTTTAAATAGAGACTATTCTTTTAGAGACTACTCAAGTGAAT
GCACACACAGTGAAAATTCTCGGAGTTGTGAGAACATGAATGGAACTTCTTACTATAACAGTCATAGCCA
CAGTGGGGAAGAAAACTTAAACCCTGTGCCTCAGCTGGACATTGGAACCTTGGAGAATGTCTTCACAGCC
CCGACATCAACTCCTTCTAGCATCCAGCAAGTCAATGTCACCGACAGTGATGAGGAGGAAGAAGAAAAAG
TGCTCAGGGATTTATAA

Translation (448 aa):
MEKCCRGKEQSLLCIQQGIPDTPFSKDRNGHVKRPMNAFMVWARIHRPALAKANPAANNAEISVQLGLEW
NKLSEEQKKPYYDEAQKIKEKHREEFPGWVYQPRPGKRKRFPLSVSNVFSGTTQNIISTNPTTVYPYRSP
TYSVVIPSLQNPITHPVGETSPAIQLPTPAVQSPSPVTLFQPSVSSAAQVAVQDPSLPVYPALPPQRFTG
PSQTDTHQLHSEATHTVKQPTPVSLESANRISSSASTAHARFATSTIQPPREYSSVSPCPRSAPIPQASP
IPHPHVYQPPPLGHPATLFGTPPRFSFHHPYFLPGPHYFPSSTCPYSRPPFGYGNFPSSMPECLSYYEDR
YPKHEGIFSTLNRDYSFRDYSSECTHSENSRSCENMNGTSYYNSHSHSGEENLNPVPQLDIGTLENVFTA
PTSTPSSIQQVNVTDSDEEEEEKVLRDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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