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Report for CCDS47184.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47184.1 Public Homo sapiens 5 LRRC14B 24 110 108 CCDS HistoryNCBI Gene:389257Re-query CCDS DB by CCDS ID:47184.1Re-query CCDS DB by GeneID:389257See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47184.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000328278.4 ENSP00000327675.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000328278.4Link to Ensembl Protein Viewer:ENSP00000327675.3Re-query CCDS DB by Nucleotide ID:ENST00000328278Re-query CCDS DB by Protein ID:ENSP00000327675
Original member Current member NCBI NM_001080478.3 NP_001073947.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001080478.3Link to Protein Sequence:NP_001073947.1Re-query CCDS DB by Nucleotide ID:NM_001080478Re-query CCDS DB by Protein ID:NP_001073947Link to BLAST:NP_001073947.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073947.1 514 A6NHZ5 514 100% 0 0

Chromosomal Locations for CCDS 47184.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 191539 192437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 194708 195353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1545 nt):
ATGGACACAATGAGGTCACTCCGCTTCATTTCTGCAGAAGCTCTGGTGTCCCACCCCCAGGTGGCCCGGC
AGAGCCTGGACAGCGTGGCCCACAACCTCTACCCACTCCTGTTCAAAGCCAGCTACCTGCTGGAGCAGGC
GGAGGTGACGCGCGCGGTGCTGGGGCGCTGGCCCCTGGAGGAGTTCCGGCTGGGAGCGCTGCTGGGTCCT
GGTGCCGACCACCCCCAGGACCTGCGCGACAGAACCTGCAGGGCCTGCCTGGAGGCGCTGGTGCGCGGCC
TCGCGGACCACGTGCTGCAGGACCGGAGCCGCCGGCGGCTGCGGGTGGCTGACCTCACGGGCATCCGAGA
TGTGCAGGTGCAGCGGTGCCCGTGCGGGAGGGCGCTGGGCAGGTGGGGCCGCACCCAGCTGCTGGCCAGG
ACCTGCTGTGAGCTGCAGGCAGAGCCCCTCGCAGCCGGGCGCCCCGTCGAGGTCCTCGCCGACCTCTTCG
TCACTGAGGGCAACTTCGAGGCGGTGGTGCAGGCTCTGAGGCCAGCGGGCCCGGCCCCTCTGCGGGTGCA
CTGCCCCTCGTTCCGGGCGGACAGCCTGAGCCCCAGCCAGCTCCTGCACGTGCTGCGTCTGGCTGGCCCG
GGTGCCCTGCGCAAGCTGGAGGTGGTGCACAACGTGCGGCTGCATGCGGGCCACGTGCAGCAGCTTCTGG
CCCAGGTGGGCTTCCCCCGGCTGGCCTCGCTCACCCTGCCCACCAAGGCCTTTGATGCACCCCCCACCTA
CGCCTCCACTCCCGACGGCGAGGACCCCCTCCTCGCCTCCATCGCCCGGGAGCTCAGCAAGATGGCGCAG
CTCACTGAGCTCAGTGTGGCCTTCTCCACGCTGACCGGGAAGATCCCGACGCTGCTTGGCCCCCTACAGA
CCCCGCTGCGAGTACTGGACCTGGCCAACTGTGCCCTGAACCACACGGACATGGCCTTCTTGGCAGACTG
TGCCCACGCTGCCCACCTGGAGGTGCTGGACCTCAGTGGACACAACCTGGTCAGCCTGTACCCCTCGACC
TTCTTCAGGCTGCTCAGCCAGGCTTCCCGGACGCTGAGGATCCTGACACTGGAGGAGTGTGGCATCGTAG
ACAGCCACGTTGGCATGCTGATCCTGGGCCTGAGCCCCTGCCACCGGCTGCGCCAGCTCAAGTTCCTCGG
GAACCCGCTGTCGGCCCGCGCCCTCCGGCGCCTCTTCACCGCACTCTGTGAGCTCCCCGAGCTGCGCTGC
ATTGAGTTCCCGGTGCCCAAGGACTGCTACCCCGAGGGTGCCGCCTACCCACAGGACGAGCTGGCCATGT
CCAAGTTCAACCAGCAGAAATACGACGAGATCGCCGAGGAGCTGCGTGCCGTGCTGCTGCGGGCTGACCG
AGAGGACATCCAAGTCTCCACACCTCTCTTTGGAAGTTTTGACCCAGACATTCAAGAAACAAGCAATGAG
CTTGGTGCTTTCTTGCTGCAAGCTTTCAAAACTGCTCTAGAAAACTTCTCCAGAGCACTCAAACAAATAG
AGTAG

Translation (514 aa):
MDTMRSLRFISAEALVSHPQVARQSLDSVAHNLYPLLFKASYLLEQAEVTRAVLGRWPLEEFRLGALLGP
GADHPQDLRDRTCRACLEALVRGLADHVLQDRSRRRLRVADLTGIRDVQVQRCPCGRALGRWGRTQLLAR
TCCELQAEPLAAGRPVEVLADLFVTEGNFEAVVQALRPAGPAPLRVHCPSFRADSLSPSQLLHVLRLAGP
GALRKLEVVHNVRLHAGHVQQLLAQVGFPRLASLTLPTKAFDAPPTYASTPDGEDPLLASIARELSKMAQ
LTELSVAFSTLTGKIPTLLGPLQTPLRVLDLANCALNHTDMAFLADCAHAAHLEVLDLSGHNLVSLYPST
FFRLLSQASRTLRILTLEECGIVDSHVGMLILGLSPCHRLRQLKFLGNPLSARALRRLFTALCELPELRC
IEFPVPKDCYPEGAAYPQDELAMSKFNQQKYDEIAEELRAVLLRADREDIQVSTPLFGSFDPDIQETSNE
LGAFLLQAFKTALENFSRALKQIE


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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