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Report for CCDS41872.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41872.1 Public Homo sapiens 13 XPO4 24 110 108 CCDS HistoryNCBI Gene:64328Re-query CCDS DB by CCDS ID:41872.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41872.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000255305.11 ENSP00000255305.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000255305.11Link to Ensembl Protein Viewer:ENSP00000255305.6Re-query CCDS DB by Nucleotide ID:ENST00000255305Re-query CCDS DB by Protein ID:ENSP00000255305
Original member Current member NCBI NM_022459.5 NP_071904.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022459.5Link to Protein Sequence:NP_071904.4Re-query CCDS DB by Nucleotide ID:NM_022459Re-query CCDS DB by Protein ID:NP_071904Link to BLAST:NP_071904.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071904.4 1151 Q9C0E2 1151 100% 0 0

Chromosomal Locations for CCDS 41872.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 20783722 20783919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20786965 20787057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20787481 20787598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20788486 20788616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20790462 20790580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20796076 20796256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20796764 20797057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20799165 20799339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20800156 20800325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20800831 20800990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20807457 20807634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20808436 20808581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20809083 20809225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20809791 20809967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20821704 20821878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20822132 20822289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20827067 20827179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20842895 20843048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20843770 20843886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20855627 20855765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20862717 20862858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20868596 20868701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20902670 20902738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3456 nt):
ATGATGGCGGCGGCGCTGGGGCCCCCAGAAGTGATCGCTCAGCTGGAGAACGCGGCTAAAGTTCTGATGG
CACCACCTTCCATGGTCAATAATGAACAACGCCAGCATGCAGAGCACATATTCTTATCATTTAGGAAATC
AAAATCACCATTTGCAGTTTGCAAGCATATTTTGGAAACTAGTAAAGTGGACTATGTCCTCTTTCAAGCT
GCCACAGCCATAATGGAAGCAGTTGTCCGAGAGTGGATTCTCTTGGAAAAAGGTAGCATCGAGTCTCTGC
GAACATTCCTTTTAACCTATGTCTTACAAAGGCCCAACCTTCAAAAGTATGTTCGGGAACAGATTCTACT
AGCAGTAGCAGTAATTGTAAAAAGAGGATCATTAGATAAATCAATTGACTGCAAAAGCATTTTTCATGAA
GTCAGCCAGTTGATTAGTAGTGGCAATCCCACTGTGCAAACTCTGGCCTGTTCTATTCTGACTGCGCTAT
TGAGTGAATTTTCAAGTTCAAGTAAAACTAGCAACATTGGATTGAGCATGGAATTCCATGGTAACTGCAA
AAGAGTTTTTCAGGAAGAAGACCTTCGTCAGATCTTCATGTTAACTGTTGAAGTTCTGCAGGAGTTCAGC
AGGCGGGAAAACCTCAATGCTCAGATGTCTTCAGTATTTCAGCGTTACCTTGCACTCGCCAATCAAGTCT
TGAGCTGGAACTTTCTTCCTCCAAATTTGGGCAGACATTATATAGCTATGTTTGAATCCTCGCAAAATGT
GCTGTTGAAGCCAACAGAGTCCTGGCGGGAGACTCTTCTGGACAGCAGAGTTATGGAGCTTTTCTTCACA
GTACATCGAAAAATCAGAGAAGATTCAGATATGGCACAAGATTCTCTGCAGTGCCTTGCCCAGTTAGCTT
CTCTTCATGGACCCATCTTCCCAGATGAAGGATCACAAGTTGATTATCTAGCACACTTCATTGAGGGATT
ACTGAATACTATCAATGGAATTGAAATAGAAGATTCTGAAGCTGTGGGGATCTCCAGCATTATCAGCAAC
CTGATAACCGTGTTCCCACGAAATGTTTTAACTGCCATTCCAAGTGAACTTTTCTCCTCCTTTGTTAACT
GCCTCACACACCTCACTTGTTCTTTTGGGCGAAGTGCTGCATTGGAAGAAGTGCTTGATAAAGATGACAT
GGTATACATGGAAGCATATGATAAATTGTTGGAGTCCTGGTTAACTTTGGTTCAAGATGACAAACATTTC
CATAAAGGCTTTTTTACCCAACATGCAGTTCAAGTTTTCAATTCCTATATTCAGTGCCACCTAGCTGCTC
CAGATGGCACAAGAAATTTGACTGCCAATGGTGTGGCCTCTCGTGAGGAGGAAGAAATAAGTGAACTTCA
AGAGGATGATCGAGACCAGTTTTCTGATCAACTGGCCAGTGTAGGAATGCTAGGAAGAATTGCTGCAGAA
CACTGTATACCTCTTCTGACAAGTTTATTAGAAGAAAGAGTAACAAGACTCCATGGTCAGTTACAACGAC
ATCAGCAACAGTTACTTGCTTCACCGGGTTCAAGCACTGTTGACAACAAAATGCTTGATGATCTCTATGA
AGATATTCACTGGCTTATTTTAGTTACAGGCTACCTCTTAGCTGATGATACTCAGGGAGAGACTCCGCTA
ATACCTCCAGAAATAATGGAATATTCCATTAAGCATTCATCTGAAGTTGACATTAATACAACACTTCAAA
TTTTGGGATCTCCAGGAGAAAAGGCTTCTTCCATCCCAGGGTACAACAGAACAGATTCTGTGATTAGGCT
GTTGTCTGCCATTCTCAGAGTTTCAGAAGTTGAATCTCGAGCAATAAGAGCAGATCTCACTCATCTACTA
AGTCCCCAGATGGGCAAAGATATTGTTTGGTTTTTAAAACGCTGGGCAAAGACTTATCTCCTGGTGGATG
AAAAACTGTATGATCAGATAAGTCTGCCATTCAGTACAGCGTTCGGAGCAGATACAGAGGGTTCTCAGTG
GATAATTGGCTACCTCTTACAAAAAGTCATCAGTAACCTCTCAGTCTGGAGTAGTGAGCAGGACCTTGCA
AATGACACTGTGCAGCTCCTTGTCACTTTGGTGGAAAGAAGAGAAAGGGCAAACTTAGTAATTCAATGTG
AGAACTGGTGGAATTTAGCTAAGCAGTTTGCAAGCCGAAGCCCACCTCTTAATTTCTTGTCAAGTCCTGT
GCAGAGGACATTGATGAAGGCTCTAGTCTTAGGAGGTTTTGCACATATGGACACAGAAACCAAACAGCAG
TATTGGACAGAGGTTCTTCAGCCACTTCAGCAGCGATTCTTAAGAGTGATAAACCAAGAAAACTTCCAGC
AGATGTGTCAGCAAGAGGAAGTCAAGCAGGAAATCACTGCCACACTAGAGGCCCTGTGTGGCATTGCTGA
GGCTACCCAGATTGACAACGTAGCAATCCTGTTTAATTTTTTAATGGACTTCCTTACCAATTGCATTGGA
TTGATGGAAGTTTACAAGAATACCCCAGAGACTGTCAATCTCATTATAGAAGTTTTTGTTGAAGTTGCAC
ATAAACAGATATGCTATCTTGGAGAGTCCAAAGCTATGAACTTATATGAAGCCTGCCTTACTTTGTTGCA
AGTGTATTCTAAGAATAATTTAGGGCGGCAAAGAATAGATGTTACAGCAGAAGAAGAGCAATACCAAGAC
CTGCTTCTCATTATGGAACTTCTTACTAACCTGCTGTCAAAAGAATTCATAGATTTCAGTGATACAGATG
AAGTGTTTAGAGGACATGAGCCAGGTCAAGCAGCAAACAGATCTGTGTCAGCAGCGGATGTTGTGTTGTA
TGGAGTAAACCTAATTCTGCCCTTGATGTCACAGGATCTCTTGAAGTTTCCAACCCTTTGTAATCAGTAC
TACAAATTAATCACATTTATCTGTGAGATTTTTCCTGAAAAAATACCACAGCTTCCTGAGGATCTGTTTA
AAAGTCTGATGTACTCCCTAGAATTAGGAATGACATCAATGAGTTCGGAGGTTTGCCAGCTTTGCCTGGA
GGCCTTGACACCGTTAGCTGAACAGTGTGCAAAAGCACAAGAAACAGACTCACCACTTTTTCTAGCAACA
CGGCACTTTCTTAAGCTGGTTTTTGATATGCTGGTTTTGCAAAAGCACAACACAGAGATGACCACTGCGG
CTGGCGAAGCTTTCTACACGTTGGTGTGTTTGCACCAGGCTGAATATTCTGAACTGGTCGAAACATTACT
ATCAAGTCAGCAAGACCCAGTTATTTACCAGAGATTAGCAGATGCCTTCAACAAGCTCACTGCAAGCAGC
ACTCCTCCTACGCTGGATCGGAAGCAGAAGATGGCCTTCTTAAAGAGTTTAGAAGAATTTATGGCAAATG
TTGGTGGTCTCCTTTGTGTAAAATAA

Translation (1151 aa):
MMAAALGPPEVIAQLENAAKVLMAPPSMVNNEQRQHAEHIFLSFRKSKSPFAVCKHILETSKVDYVLFQA
ATAIMEAVVREWILLEKGSIESLRTFLLTYVLQRPNLQKYVREQILLAVAVIVKRGSLDKSIDCKSIFHE
VSQLISSGNPTVQTLACSILTALLSEFSSSSKTSNIGLSMEFHGNCKRVFQEEDLRQIFMLTVEVLQEFS
RRENLNAQMSSVFQRYLALANQVLSWNFLPPNLGRHYIAMFESSQNVLLKPTESWRETLLDSRVMELFFT
VHRKIREDSDMAQDSLQCLAQLASLHGPIFPDEGSQVDYLAHFIEGLLNTINGIEIEDSEAVGISSIISN
LITVFPRNVLTAIPSELFSSFVNCLTHLTCSFGRSAALEEVLDKDDMVYMEAYDKLLESWLTLVQDDKHF
HKGFFTQHAVQVFNSYIQCHLAAPDGTRNLTANGVASREEEEISELQEDDRDQFSDQLASVGMLGRIAAE
HCIPLLTSLLEERVTRLHGQLQRHQQQLLASPGSSTVDNKMLDDLYEDIHWLILVTGYLLADDTQGETPL
IPPEIMEYSIKHSSEVDINTTLQILGSPGEKASSIPGYNRTDSVIRLLSAILRVSEVESRAIRADLTHLL
SPQMGKDIVWFLKRWAKTYLLVDEKLYDQISLPFSTAFGADTEGSQWIIGYLLQKVISNLSVWSSEQDLA
NDTVQLLVTLVERRERANLVIQCENWWNLAKQFASRSPPLNFLSSPVQRTLMKALVLGGFAHMDTETKQQ
YWTEVLQPLQQRFLRVINQENFQQMCQQEEVKQEITATLEALCGIAEATQIDNVAILFNFLMDFLTNCIG
LMEVYKNTPETVNLIIEVFVEVAHKQICYLGESKAMNLYEACLTLLQVYSKNNLGRQRIDVTAEEEQYQD
LLLIMELLTNLLSKEFIDFSDTDEVFRGHEPGQAANRSVSAADVVLYGVNLILPLMSQDLLKFPTLCNQY
YKLITFICEIFPEKIPQLPEDLFKSLMYSLELGMTSMSSEVCQLCLEALTPLAEQCAKAQETDSPLFLAT
RHFLKLVFDMLVLQKHNTEMTTAAGEAFYTLVCLHQAEYSELVETLLSSQQDPVIYQRLADAFNKLTASS
TPPTLDRKQKMAFLKSLEEFMANVGGLLCVK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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