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Report for CCDS43123.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43123.1 Public Homo sapiens 3 NFKBIZ 24 110 108 CCDS HistoryNCBI Gene:64332Re-query CCDS DB by CCDS ID:43123.1Re-query CCDS DB by GeneID:64332See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43123.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000394054.6 ENSP00000377618.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000394054.6Link to Ensembl Protein Viewer:ENSP00000377618.2Re-query CCDS DB by Nucleotide ID:ENST00000394054Re-query CCDS DB by Protein ID:ENSP00000377618
Original member Current member NCBI NM_001005474.3 NP_001005474.1 Accepted alive Link to Nucleotide Sequence:NM_001005474.3Link to Protein Sequence:NP_001005474.1Re-query CCDS DB by Nucleotide ID:NM_001005474Re-query CCDS DB by Protein ID:NP_001005474Link to BLAST:NP_001005474.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001005474.1 618 Q9BYH8-2 618 100% 0 0

Chromosomal Locations for CCDS 43123.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 101852096 101852224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 101852738 101852768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 101852886 101852989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 101853091 101853863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 101854578 101854683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 101855062 101855208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 101855395 101855458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 101855733 101855902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 101857073 101857183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 101857292 101857459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 101859318 101859371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1857 nt):
ATGGGGGTTGGCAGGCAGCAGAGAGGCCCCTTTCAAGGTGTTCGGGTAAAGAACTCAGTGAAGGAACTCC
TGTTGCACATCCGAAGTCATAAACAGAAGGCTTCTGGCCAAGCTGTGGATGATTTTAAGACACAAGGTGT
GAACATAGAACAGTTCAGAGAATTGAAGAACACAGTATCATACAGTGGGAAAAGGAAAGGGCCCGATTCG
TTGTCTGATGGACCTGCTTGCAAAAGGCCAGCTCTGTTGCATTCCCAATTTTTGACACCACCTCAAACAC
CAACGCCCGGGGAGAGCATGGAAGATGTTCATCTCAATGAACCCAAACAGGAGAGCAGTGCTGATCTGCT
TCAGAACATTATCAACATTAAGAATGAATGCAGCCCCGTTTCCCTGAACACAGTTCAAGTTAGCTGGCTG
AACCCCGTGGTGGTCCCTCAGAGCTCCCCCGCAGAGCAGTGTCAGGACTTCCATGGAGGGCAGGTCTTTT
CTCCACCTCAGAAATGCCAACCATTCCAAGTCAGGGGCTCCCAACAAATGATAGACCAGGCTTCCCTGTA
CCAGTATTCTCCACAGAACCAGCATGTAGAGCAGCAGCCACACTACACCCACAAACCAACTCTGGAATAC
AGTCCTTTTCCCATACCTCCCCAGTCCCCCGCTTATGAACCAAACCTCTTTGATGGTCCAGAATCACAGT
TTTGCCCAAACCAAAGCTTAGTTTCCCTTCTTGGTGATCAAAGGGAATCTGAGAATATTGCTAATCCCAT
GCAGACTTCCTCCAGTGTTCAGCAGCAAAATGATGCTCACTTGCACAGCTTCAGCATGATGCCCAGCAGC
GCCTGTGAGGCCATGGTGGGGCACGAGATGGCCTCTGACTCTTCAAACACTTCACTGCCATTCTCAAACA
TGGGAAATCCAATGAACACCACACAGTTAGGGAAATCACTTTTTCAGTGGCAGGTGGAGCAGGAAGAAAG
CAAATTGGCAAATATTTCCCAAGACCAGTTTCTTTCAAAGGATGCAGATGGTGACACGTTCCTTCATATT
GCTGTTGCCCAAGGGAGAAGGGCACTTTCCTATGTTCTTGCAAGAAAGATGAATGCACTTCACATGCTGG
ATATTAAAGAGCACAATGGACAGAGTGCCTTTCAGGTGGCAGTGGCTGCCAATCAGCATCTCATTGTGCA
GGATCTGGTGAACATCGGGGCACAGGTGAACACCACAGACTGCTGGGGAAGAACACCTCTGCATGTGTGT
GCTGAGAAGGGCCACTCCCAGGTGCTTCAGGCGATTCAGAAGGGAGCAGTGGGAAGTAATCAGTTTGTGG
ATCTTGAGGCAACTAACTATGATGGCCTGACTCCCCTTCACTGTGCAGTCATAGCCCACAATGCTGTGGT
CCATGAACTCCAGAGAAATCAACAGCCTCATTCACCTGAAGTTCAGGAGCTTTTACTGAAGAATAAGAGT
CTGGTTGATACCATTAAGTGCCTAATTCAAATGGGAGCAGCGGTGGAAGCGAAGGATCGCAAAAGTGGCC
GCACAGCCCTGCATTTGGCAGCTGAAGAAGCAAATCTGGAACTCATTCGCCTCTTTTTGGAGCTGCCCAG
TTGCCTGTCTTTTGTGAATGCAAAGGCTTACAATGGCAACACTGCCCTCCATGTTGCTGCCAGCTTGCAG
TATCGGTTGACACAATTAGATGCTGTCCGCCTGTTGATGAGGAAGGGAGCAGACCCAAGTACTCGGAACT
TGGAGAACGAACAGCCAGTGCATTTGGTTCCCGATGGCCCTGTGGGAGAACAGATCCGACGTATCCTGAA
GGGAAAGTCCATTCAGCAGAGAGCTCCACCGTATTAG

Translation (618 aa):
MGVGRQQRGPFQGVRVKNSVKELLLHIRSHKQKASGQAVDDFKTQGVNIEQFRELKNTVSYSGKRKGPDS
LSDGPACKRPALLHSQFLTPPQTPTPGESMEDVHLNEPKQESSADLLQNIINIKNECSPVSLNTVQVSWL
NPVVVPQSSPAEQCQDFHGGQVFSPPQKCQPFQVRGSQQMIDQASLYQYSPQNQHVEQQPHYTHKPTLEY
SPFPIPPQSPAYEPNLFDGPESQFCPNQSLVSLLGDQRESENIANPMQTSSSVQQQNDAHLHSFSMMPSS
ACEAMVGHEMASDSSNTSLPFSNMGNPMNTTQLGKSLFQWQVEQEESKLANISQDQFLSKDADGDTFLHI
AVAQGRRALSYVLARKMNALHMLDIKEHNGQSAFQVAVAANQHLIVQDLVNIGAQVNTTDCWGRTPLHVC
AEKGHSQVLQAIQKGAVGSNQFVDLEATNYDGLTPLHCAVIAHNAVVHELQRNQQPHSPEVQELLLKNKS
LVDTIKCLIQMGAAVEAKDRKSGRTALHLAAEEANLELIRLFLELPSCLSFVNAKAYNGNTALHVAASLQ
YRLTQLDAVRLLMRKGADPSTRNLENEQPVHLVPDGPVGEQIRRILKGKSIQQRAPPY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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