NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS2946.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2946.1 Public Homo sapiens 3 NFKBIZ 24 110 108 CCDS HistoryNCBI Gene:64332Re-query CCDS DB by CCDS ID:2946.1Re-query CCDS DB by GeneID:64332See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2946.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000326172.9 ENSP00000325663.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000326172.9Link to Ensembl Protein Viewer:ENSP00000325663.5Re-query CCDS DB by Nucleotide ID:ENST00000326172Re-query CCDS DB by Protein ID:ENSP00000325663
Original member Current member NCBI NM_031419.4 NP_113607.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_031419.4Link to Protein Sequence:NP_113607.1Re-query CCDS DB by Nucleotide ID:NM_031419Re-query CCDS DB by Protein ID:NP_113607Link to BLAST:NP_113607.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_113607.1 718 Q9BYH8-1 718 100% 0 0

Chromosomal Locations for CCDS 2946.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 101849629 101849917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 101852085 101852224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 101852738 101852768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 101852886 101852989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 101853091 101853863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 101854578 101854683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 101855062 101855208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 101855395 101855458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 101855733 101855902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 101857073 101857183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 101857292 101857459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 101859318 101859371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2157 nt):
ATGATTGTGGACAAGCTGCTGGACGACAGCCGCGGCGGAGAGGGGCTGCGGGACGCGGCGGGCGGCTGCG
GCCTCATGACCAGCCCGCTCAACCTGAGCTACTTCTACGGCGCGTCGCCGCCCGCCGCCGCCCCGGGCGC
CTGCGACGCCAGCTGCTCGGTCTTGGGCCCCTCGGCGCCCGGCTCGCCCGGCTCCGACTCCTCCGACTTC
TCCTCTGCCTCGTCGGTGTCCTCCTGCGGCGCCGTGGAGTCCCGGTCGAGAGGCGGCGCCCGCGCCGAGC
GCCAGCCAGTTGAGCCCCATATGGGGGTTGGCAGGCAGCAGAGAGGCCCCTTTCAAGGTGTTCGGGTAAA
GAACTCAGTGAAGGAACTCCTGTTGCACATCCGAAGTCATAAACAGAAGGCTTCTGGCCAAGCTGTGGAT
GATTTTAAGACACAAGGTGTGAACATAGAACAGTTCAGAGAATTGAAGAACACAGTATCATACAGTGGGA
AAAGGAAAGGGCCCGATTCGTTGTCTGATGGACCTGCTTGCAAAAGGCCAGCTCTGTTGCATTCCCAATT
TTTGACACCACCTCAAACACCAACGCCCGGGGAGAGCATGGAAGATGTTCATCTCAATGAACCCAAACAG
GAGAGCAGTGCTGATCTGCTTCAGAACATTATCAACATTAAGAATGAATGCAGCCCCGTTTCCCTGAACA
CAGTTCAAGTTAGCTGGCTGAACCCCGTGGTGGTCCCTCAGAGCTCCCCCGCAGAGCAGTGTCAGGACTT
CCATGGAGGGCAGGTCTTTTCTCCACCTCAGAAATGCCAACCATTCCAAGTCAGGGGCTCCCAACAAATG
ATAGACCAGGCTTCCCTGTACCAGTATTCTCCACAGAACCAGCATGTAGAGCAGCAGCCACACTACACCC
ACAAACCAACTCTGGAATACAGTCCTTTTCCCATACCTCCCCAGTCCCCCGCTTATGAACCAAACCTCTT
TGATGGTCCAGAATCACAGTTTTGCCCAAACCAAAGCTTAGTTTCCCTTCTTGGTGATCAAAGGGAATCT
GAGAATATTGCTAATCCCATGCAGACTTCCTCCAGTGTTCAGCAGCAAAATGATGCTCACTTGCACAGCT
TCAGCATGATGCCCAGCAGCGCCTGTGAGGCCATGGTGGGGCACGAGATGGCCTCTGACTCTTCAAACAC
TTCACTGCCATTCTCAAACATGGGAAATCCAATGAACACCACACAGTTAGGGAAATCACTTTTTCAGTGG
CAGGTGGAGCAGGAAGAAAGCAAATTGGCAAATATTTCCCAAGACCAGTTTCTTTCAAAGGATGCAGATG
GTGACACGTTCCTTCATATTGCTGTTGCCCAAGGGAGAAGGGCACTTTCCTATGTTCTTGCAAGAAAGAT
GAATGCACTTCACATGCTGGATATTAAAGAGCACAATGGACAGAGTGCCTTTCAGGTGGCAGTGGCTGCC
AATCAGCATCTCATTGTGCAGGATCTGGTGAACATCGGGGCACAGGTGAACACCACAGACTGCTGGGGAA
GAACACCTCTGCATGTGTGTGCTGAGAAGGGCCACTCCCAGGTGCTTCAGGCGATTCAGAAGGGAGCAGT
GGGAAGTAATCAGTTTGTGGATCTTGAGGCAACTAACTATGATGGCCTGACTCCCCTTCACTGTGCAGTC
ATAGCCCACAATGCTGTGGTCCATGAACTCCAGAGAAATCAACAGCCTCATTCACCTGAAGTTCAGGAGC
TTTTACTGAAGAATAAGAGTCTGGTTGATACCATTAAGTGCCTAATTCAAATGGGAGCAGCGGTGGAAGC
GAAGGATCGCAAAAGTGGCCGCACAGCCCTGCATTTGGCAGCTGAAGAAGCAAATCTGGAACTCATTCGC
CTCTTTTTGGAGCTGCCCAGTTGCCTGTCTTTTGTGAATGCAAAGGCTTACAATGGCAACACTGCCCTCC
ATGTTGCTGCCAGCTTGCAGTATCGGTTGACACAATTAGATGCTGTCCGCCTGTTGATGAGGAAGGGAGC
AGACCCAAGTACTCGGAACTTGGAGAACGAACAGCCAGTGCATTTGGTTCCCGATGGCCCTGTGGGAGAA
CAGATCCGACGTATCCTGAAGGGAAAGTCCATTCAGCAGAGAGCTCCACCGTATTAG

Translation (718 aa):
MIVDKLLDDSRGGEGLRDAAGGCGLMTSPLNLSYFYGASPPAAAPGACDASCSVLGPSAPGSPGSDSSDF
SSASSVSSCGAVESRSRGGARAERQPVEPHMGVGRQQRGPFQGVRVKNSVKELLLHIRSHKQKASGQAVD
DFKTQGVNIEQFRELKNTVSYSGKRKGPDSLSDGPACKRPALLHSQFLTPPQTPTPGESMEDVHLNEPKQ
ESSADLLQNIINIKNECSPVSLNTVQVSWLNPVVVPQSSPAEQCQDFHGGQVFSPPQKCQPFQVRGSQQM
IDQASLYQYSPQNQHVEQQPHYTHKPTLEYSPFPIPPQSPAYEPNLFDGPESQFCPNQSLVSLLGDQRES
ENIANPMQTSSSVQQQNDAHLHSFSMMPSSACEAMVGHEMASDSSNTSLPFSNMGNPMNTTQLGKSLFQW
QVEQEESKLANISQDQFLSKDADGDTFLHIAVAQGRRALSYVLARKMNALHMLDIKEHNGQSAFQVAVAA
NQHLIVQDLVNIGAQVNTTDCWGRTPLHVCAEKGHSQVLQAIQKGAVGSNQFVDLEATNYDGLTPLHCAV
IAHNAVVHELQRNQQPHSPEVQELLLKNKSLVDTIKCLIQMGAAVEAKDRKSGRTALHLAAEEANLELIR
LFLELPSCLSFVNAKAYNGNTALHVAASLQYRLTQLDAVRLLMRKGADPSTRNLENEQPVHLVPDGPVGE
QIRRILKGKSIQQRAPPY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH