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Report for CCDS13299.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13299.1 Public Homo sapiens 20 VSTM2L 24 110 108 CCDS HistoryNCBI Gene:128434Re-query CCDS DB by CCDS ID:13299.1Re-query CCDS DB by GeneID:128434See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13299.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373461.9 ENSP00000362560.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000373461.9Link to Ensembl Protein Viewer:ENSP00000362560.4Re-query CCDS DB by Nucleotide ID:ENST00000373461Re-query CCDS DB by Protein ID:ENSP00000362560
Original member Current member NCBI NM_080607.3 NP_542174.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_080607.3Link to Protein Sequence:NP_542174.1Re-query CCDS DB by Nucleotide ID:NM_080607Re-query CCDS DB by Protein ID:NP_542174Link to BLAST:NP_542174.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_542174.1 204 Q96N03-1 204 100% 0 0

Chromosomal Locations for CCDS 13299.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 37903351 37903471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 37931635 37931804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 37933539 37933589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 37943981 37944253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (615 nt):
ATGGGGGCCCCGCTCGCCGTAGCGCTGGGCGCCCTCCACTACCTGGCACTTTTCCTGCAACTCGGCGGCG
CCACGCGGCCCGCCGGCCACGCGCCCTGGGACAACCACGTCTCCGGCCACGCCCTGTTCACAGAGACACC
CCATGACATGACAGCACGGACGGGCGAGGACGTGGAGATGGCCTGCTCCTTCCGCGGCAGCGGCTCCCCC
TCCTACTCGCTGGAGATCCAGTGGTGGTATGTACGGAGCCACCGGGACTGGACCGACAAGCAGGCGTGGG
CCTCGAACCAGCTAAAAGCATCTCAGCAGGAAGACGCAGGGAAGGAGGCAACCAAAATAAGTGTGGTCAA
GGTGGTGGGCAGCAACATCTCCCACAAGCTGCGCCTGTCCCGGGTGAAGCCCACGGACGAAGGCACCTAC
GAGTGCCGCGTCATCGACTTCAGCGACGGCAAGGCCCGGCACCACAAGGTCAAGGCCTACCTGCGGGTGC
AGCCAGGGGAGAACTCCGTCCTGCATCTGCCCGAAGCCCCTCCCGCCGCGCCCGCCCCGCCGCCCCCCAA
GCCAGGCAAGGAGCTGAGGAAGCGCTCGGTGGACCAGGAGGCCTGCAGCCTCTAG

Translation (204 aa):
MGAPLAVALGALHYLALFLQLGGATRPAGHAPWDNHVSGHALFTETPHDMTARTGEDVEMACSFRGSGSP
SYSLEIQWWYVRSHRDWTDKQAWASNQLKASQQEDAGKEATKISVVKVVGSNISHKLRLSRVKPTDEGTY
ECRVIDFSDGKARHHKVKAYLRVQPGENSVLHLPEAPPAAPAPPPPKPGKELRKRSVDQEACSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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