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Report for CCDS2473.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2473.1 Public Homo sapiens 2 SLC16A14 24 110 108 CCDS HistoryNCBI Gene:151473Re-query CCDS DB by CCDS ID:2473.1Re-query CCDS DB by GeneID:151473See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2473.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000295190.9 ENSP00000295190.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000295190.9Link to Ensembl Protein Viewer:ENSP00000295190.4Re-query CCDS DB by Nucleotide ID:ENST00000295190Re-query CCDS DB by Protein ID:ENSP00000295190
Original member Current member NCBI NM_152527.5 NP_689740.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152527.5Link to Protein Sequence:NP_689740.2Re-query CCDS DB by Nucleotide ID:NM_152527Re-query CCDS DB by Protein ID:NP_689740Link to BLAST:NP_689740.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689740.2 510 Q7RTX9-1 510 100% 0 0

Chromosomal Locations for CCDS 2473.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 230037380 230037531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 230045745 230046722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 230049761 230049904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 230059094 230059352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1533 nt):
ATGTATACCAGTCATGAAGATATTGGGTATGATTTTGAAGATGGCCCCAAAGACAAAAAGACACTGAAGC
CCCACCCAAACATTGATGGCGGATGGGCTTGGATGATGGTGCTCTCCTCTTTCTTTGTGCACATCCTCAT
CATGGGCTCCCAGATGGCCCTGGGTGTCCTCAACGTGGAATGGCTGGAAGAATTCCACCAGAGCCGCGGC
CTGACCGCCTGGGTCAGCTCCCTCAGCATGGGCATCACCTTGATAGTGGGCCCTTTCATCGGCTTGTTCA
TTAACACCTGTGGGTGCCGCCAGACTGCGATCATTGGAGGGCTCGTCAACTCCCTGGGCTGGGTGTTGAG
TGCCTATGCTGCAAACGTGCATTATCTCTTCATTACTTTTGGAGTCGCAGCTGGCCTGGGCAGCGGGATG
GCCTACCTGCCAGCGGTGGTCATGGTGGGCAGGTATTTCCAGAAGAGACGCGCCCTCGCCCAGGGCCTCA
GCACCACGGGGACCGGATTCGGTACGTTCCTAATGACTGTGCTGCTGAAGTACCTGTGCGCAGAGTACGG
CTGGAGGAATGCCATGTTGATCCAAGGTGCCGTTTCCCTAAACCTGTGTGTTTGTGGGGCGCTCATGAGG
CCCCTCTCTCCTGGTAAAAACCCAAACGACCCAGGAGAGAAAGATGTGCGTGGCCTGCCAGCGCACTCCA
CAGAATCTGTGAAGTCAACTGGACAGCAGGGAAGAACAGAAGAGAAGGATGGTGGGCTCGGGAACGAGGA
GACCCTCTGCGACCTGCAAGCCCAGGAGTGCCCCGATCAGGCCGGGCACAGGAAGAACATGTGTGCCCTC
CGGATTCTGAAGACTGTCAGCTGGCTCACCATGAGAGTCAGGAAGGGCTTCGAGGACTGGTATTCGGGCT
ACTTTGGGACAGCCTCTCTATTTACAAATCGAATGTTTGTAGCCTTTATTTTCTGGGCTTTGTTTGCATA
CAGCAGCTTTGTCATCCCCTTCATTCACCTCCCAGAAATCGTCAATTTGTATAACTTATCGGAGCAAAAC
GACGTTTTCCCTCTGACGTCAATTATAGCAATAGTTCACATCTTTGGAAAAGTGATCCTGGGCGTCATAG
CCGACTTGCCTTGCATTAGTGTTTGGAATGTCTTCCTGTTGGCCAACTTCACCCTTGTCCTCAGTATTTT
TATTCTGCCGTTGATGCACACGTACGCTGGCCTGGCGGTCATCTGTGCGCTGATAGGGTTTTCCAGTGGT
TATTTCTCCCTAATGCCCGTAGTGACTGAAGACTTGGTTGGCATTGAACACCTGGCCAATGCCTACGGCA
TCATCATCTGTGCTAATGGCATCTCTGCATTGCTGGGACCACCTTTTGCAGGGTGGATCTATGACATCAC
GCAAAAATATGATTTTTCCTTCTACATATGTGGTTTGCTTTACATGATAGGAATACTCTTTTTACTTATT
CAGCCGTGCATTCGAATTATAGAACAATCCAGAAGAAAATACATGGATGGTGCACATGTTTAG

Translation (510 aa):
MYTSHEDIGYDFEDGPKDKKTLKPHPNIDGGWAWMMVLSSFFVHILIMGSQMALGVLNVEWLEEFHQSRG
LTAWVSSLSMGITLIVGPFIGLFINTCGCRQTAIIGGLVNSLGWVLSAYAANVHYLFITFGVAAGLGSGM
AYLPAVVMVGRYFQKRRALAQGLSTTGTGFGTFLMTVLLKYLCAEYGWRNAMLIQGAVSLNLCVCGALMR
PLSPGKNPNDPGEKDVRGLPAHSTESVKSTGQQGRTEEKDGGLGNEETLCDLQAQECPDQAGHRKNMCAL
RILKTVSWLTMRVRKGFEDWYSGYFGTASLFTNRMFVAFIFWALFAYSSFVIPFIHLPEIVNLYNLSEQN
DVFPLTSIIAIVHIFGKVILGVIADLPCISVWNVFLLANFTLVLSIFILPLMHTYAGLAVICALIGFSSG
YFSLMPVVTEDLVGIEHLANAYGIIICANGISALLGPPFAGWIYDITQKYDFSFYICGLLYMIGILFLLI
QPCIRIIEQSRRKYMDGAHV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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