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Report for CCDS1768.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1768.1 Public Homo sapiens 2 TRMT61B 24 110 108 CCDS HistoryNCBI Gene:55006Re-query CCDS DB by CCDS ID:1768.1Re-query CCDS DB by GeneID:55006See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1768.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000306108.10 ENSP00000302801.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000306108.10Link to Ensembl Protein Viewer:ENSP00000302801.5Re-query CCDS DB by Nucleotide ID:ENST00000306108Re-query CCDS DB by Protein ID:ENSP00000302801
Original member Current member NCBI NM_017910.4 NP_060380.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017910.4Link to Protein Sequence:NP_060380.3Re-query CCDS DB by Nucleotide ID:NM_017910Re-query CCDS DB by Protein ID:NP_060380Link to BLAST:NP_060380.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060380.3 477 Q9BVS5 477 100% 0 0

Chromosomal Locations for CCDS 1768.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 28850199 28850242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28850328 28850405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28851072 28851298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28852408 28852499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28861118 28861308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28865017 28865119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28869579 28870277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1434 nt):
ATGCTAATGGCATGGTGCCGCGGTCCTGTCTTGCTGTGCCTGCGGCAGGGGCTCGGAACCAATTCATTCC
TGCACGGCCTGGGGCAGGAGCCCTTCGAGGGAGCTCGGTCACTGTGTTGCAGGTCCTCGCCTAGAGACCT
GCGAGATGGAGAAAGAGAGCACGAGGCGGCACAAAGGAAAGCCCCAGGAGCAGAGTCTTGCCCATCTCTC
CCTCTGAGCATCTCGGACATTGGGACTGGATGTCTTTCGTCACTGGAAAACCTCAGACTGCCGACGCTGC
GGGAAGAGTCATCCCCTCGAGAGCTCGAGGACTCGAGCGGAGACCAGGGCCGGTGCGGTCCCACACACCA
GGGATCCGAGGATCCTTCGATGCTCTCGCAGGCCCAGTCCGCTACCGAGGTCGAAGAGCGTCACGTCTCC
CCTTCTTGTTCAACTTCCAGAGAGAGACCCTTTCAGGCTGGGGAACTGATTTTAGCTGAGACTGGGGAGG
GAGAAACAAAATTTAAGAAATTATTTAGGTTGAACAACTTCGGACTCTTAAATAGTAACTGGGGGGCAGT
CCCGTTCGGCAAGATCGTGGGGAAGTTCCCCGGCCAGATACTGAGGAGTTCCTTCGGTAAGCAGTACATG
CTGAGGAGGCCAGCCTTGGAAGACTATGTAGTATTGATGAAAAGAGGGACTGCCATAACATTCCCAAAGG
ATATTAATATGATTCTCTCAATGATGGATATCAACCCAGGTGATACTGTTTTGGAAGCTGGCTCAGGCTC
TGGTGGAATGAGCTTATTTTTATCCAAAGCAGTTGGATCACAAGGACGAGTCATAAGTTTTGAGGTACGA
AAAGACCACCATGATCTGGCTAAGAAGAATTACAAACACTGGCGTGATTCATGGAAATTAAGTCATGTAG
AAGAGTGGCCAGACAATGTGGATTTTATTCATAAGGACATTTCAGGAGCAACCGAAGACATAAAATCTTT
AACATTTGACGCAGTAGCTTTGGATATGTTAAATCCTCATGTTACTTTGCCTGTTTTTTACCCACATCTT
AAGCATGGTGGTGTATGTGCTGTATATGTAGTAAACATCACACAGGTTATTGAACTTTTAGATGGAATTC
GCACCTGTGAACTTGCTCTTTCATGTGAAAAGATAAGCGAGGTCATTGTCAGAGATTGGTTGGTTTGCCT
TGCAAAACAGAAAAATGGAATTTTAGCTCAAAAAGTAGAATCTAAAATCAACACAGATGTACAACTAGAT
TCTCAAGAGAAAATTGGAGTTAAAGGTGAGCTGTTTCAAGAGGATGACCATGAAGAATCGCATTCTGATT
TTCCATATGGATCATTTCCCTATGTTGCTAGACCAGTACACTGGCAACCTGGTCATACAGCTTTTCTTGT
CAAGTTGAGGAAGGTCAAACCACAACTTAACTGA

Translation (477 aa):
MLMAWCRGPVLLCLRQGLGTNSFLHGLGQEPFEGARSLCCRSSPRDLRDGEREHEAAQRKAPGAESCPSL
PLSISDIGTGCLSSLENLRLPTLREESSPRELEDSSGDQGRCGPTHQGSEDPSMLSQAQSATEVEERHVS
PSCSTSRERPFQAGELILAETGEGETKFKKLFRLNNFGLLNSNWGAVPFGKIVGKFPGQILRSSFGKQYM
LRRPALEDYVVLMKRGTAITFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVR
KDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHL
KHGGVCAVYVVNITQVIELLDGIRTCELALSCEKISEVIVRDWLVCLAKQKNGILAQKVESKINTDVQLD
SQEKIGVKGELFQEDDHEESHSDFPYGSFPYVARPVHWQPGHTAFLVKLRKVKPQLN


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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