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Report for CCDS12498.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12498.1 Public Homo sapiens 19 ZNF420 24 110 108 CCDS HistoryNCBI Gene:147923Re-query CCDS DB by CCDS ID:12498.1Re-query CCDS DB by GeneID:147923See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12498.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000337995.4 ENSP00000338770.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000337995.4Link to Ensembl Protein Viewer:ENSP00000338770.2Re-query CCDS DB by Nucleotide ID:ENST00000337995Re-query CCDS DB by Protein ID:ENSP00000338770
Original member Current member NCBI NM_144689.5 NP_653290.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_144689.5Link to Protein Sequence:NP_653290.2Re-query CCDS DB by Nucleotide ID:NM_144689Re-query CCDS DB by Protein ID:NP_653290Link to BLAST:NP_653290.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_653290.2 688 Q8TAQ5-1 688 100% 0 0

Chromosomal Locations for CCDS 12498.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 37089119 37089127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 37090995 37091121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 37127128 37129058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2067 nt):
ATGGCTCGGAAATTAGTGATGTTCAGGGATGTTGCCATTGACTTCTCTCAGGAAGAGTGGGAATGCCTGG
ACTCTGCTCAGAGAGATTTGTATAGAGATGTGATGTTGGAGAACTATAGCAACTTGGTATCACTAGACTT
GCCTTCAAGGTGTGCAAGTAAGGACTTATCTCCAGAAAAGAACACTTATGAAACAGAATTATCCCAATGG
GAAATGAGTGACAGACTTGAAAACTGTGATCTTGAAGAGTCCAATTCCAGGGATTATTTGGAAGCCAAAG
GCAAGATGGAGAAGCAACAAGAAAATCAGAAGGAATATTTCAGGCAAGGGATGATCATATATGACAAAAT
GTCCATTTTCAACCAGCATACTTACTTATCTCAACATTCAAGATGTCATTCTACTGAGAAACCCTATAAA
TGTAAGGAATGTGGGAAAGCCTTCAGACGAGCCTCACACCTAACACAACATCAAAGTATTCATACTGGTG
AAAAACCCTATGAATGTAAGCAATGCGGGAAGGCCTTTAGTCGTGATTCACAACTCAGTCTTCATCAGAG
ACTTCATACTGGTGAGAAACCCTATGCATGTAAGGAATGTGGGAAGGCCTTTACTCAAAGCTCACAACTT
ATTTTACATCATAGAATTCATACTGGTGAAAAACCATATAAATGTGAAGAATGTGGGAAAGCCTTTATTC
GTAGCTCACAACTTACCCGACATCAAAAAGTTCATACTGGTGAGAAACCTTATGAATGTAAAGAATGTGG
GAAGGCCTTTACTCAGAATTCACAACTTACACTACACCAGAGACTTCATACTGGTGAAAAGCTCTATGAA
TGTAAAGAATGTAGGAAGGTCTTTACTCAGCTCTCACAACTTATTCTGCATAAGAGAATTCATACCGGTG
AGAAACCCTATGAATGTAAGGAATGTGGAAAAGCTTTTATTTGTGGCTCACAGCTTTCTCAACATCAGAA
AATTCATAATGGGGAAAAACCATATGAATGTAAGGAATGTGGAAGGGCCTTTATTCGGGGCTCACTACTG
ATGCAACATCAGAGGATTCATACTGGTGAAAAACCCTATAAATGTGAAGAATGTGGGAAGGCCTTTATCC
GTGGCTCACAACTTACTCAACACCAGAGAATTCACACCAATGAAAAGCCCTATGAATGTAAGGAATGTGG
AAAGATGTTTAGTCATGGCTCACAACTTACTCAACATCAGAGAATACACACTGGTGAGAAACCCTATCAA
TGTAAGGAATGTGGAAAAGCGTTTAATCGTGGCTCACTCCTTACACGACACCAGAGGATTCATACTGGTG
AGAAACCCTATGAATGTAAAGAATGTGGAAAAACCTTTAGTCGTGGCTCAGAACTTACTCAACATGAGCG
AATTCACACAGGTGAGAAACCCTATGAATGTAAGGAATGTGGGAAATCTTTTATTCGTGGTTCCCAGCTT
ACTCAACATCAGAGAATCCATACTGGTGAGAAACCTTATGAATGTAAAGAATGTAGAATGGCCTTTACTC
AGAGTTCACATCTTTCCCAACATCAAAGACTTCACACTGGTGAGAAACCCTATGTGTGTAATGAATGTGG
AAAGGCCTTTGCGCGTGGCTTACTACTTATACAACATCAGAGAATTCATACTGGTGAGAAACCATATCAA
TGTAAGGAATGTGGGAAAGCCTTTATTCGTGGTTCACAGTTGACTCAACATCAGCGAATTCACACTGGAG
AAAAACCCTATGAATGCAAGGAGTGTGGCAAGGCCTTTAGTCATGGCTCTCAGCTTACTCTACATCAGAG
AATCCATACTGGTGAGAAGCCCTATGAATGCAGAGAATGTAGAAAGGCCTTTACTCAGAGTTCACATCTT
TCTCGGCATCAGAGAATTCATACTGGTGAGAAACCATATCAATGTAAGGAATGTGGGAAGGCCTTTACTC
GTGGTTCACAGCTAACTCAACATCAGAGAATTCATATCAGTGAGAAATCTTTTGAATATAAGGAATGTGG
GATTGACTTTAGTCATGGCTCACAAGTTTACATGTGA

Translation (688 aa):
MARKLVMFRDVAIDFSQEEWECLDSAQRDLYRDVMLENYSNLVSLDLPSRCASKDLSPEKNTYETELSQW
EMSDRLENCDLEESNSRDYLEAKGKMEKQQENQKEYFRQGMIIYDKMSIFNQHTYLSQHSRCHSTEKPYK
CKECGKAFRRASHLTQHQSIHTGEKPYECKQCGKAFSRDSQLSLHQRLHTGEKPYACKECGKAFTQSSQL
ILHHRIHTGEKPYKCEECGKAFIRSSQLTRHQKVHTGEKPYECKECGKAFTQNSQLTLHQRLHTGEKLYE
CKECRKVFTQLSQLILHKRIHTGEKPYECKECGKAFICGSQLSQHQKIHNGEKPYECKECGRAFIRGSLL
MQHQRIHTGEKPYKCEECGKAFIRGSQLTQHQRIHTNEKPYECKECGKMFSHGSQLTQHQRIHTGEKPYQ
CKECGKAFNRGSLLTRHQRIHTGEKPYECKECGKTFSRGSELTQHERIHTGEKPYECKECGKSFIRGSQL
TQHQRIHTGEKPYECKECRMAFTQSSHLSQHQRLHTGEKPYVCNECGKAFARGLLLIQHQRIHTGEKPYQ
CKECGKAFIRGSQLTQHQRIHTGEKPYECKECGKAFSHGSQLTLHQRIHTGEKPYECRECRKAFTQSSHL
SRHQRIHTGEKPYQCKECGKAFTRGSQLTQHQRIHISEKSFEYKECGIDFSHGSQVYM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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