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Report for CCDS32958.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32958.1 Public Homo sapiens 19 IQCN 24 110 108 CCDS HistoryNCBI Gene:80726Re-query CCDS DB by CCDS ID:32958.1Re-query CCDS DB by GeneID:80726See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 32958.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000600328.7 ENSP00000470780.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000600328.7Link to Ensembl Protein Viewer:ENSP00000470780.1Re-query CCDS DB by Nucleotide ID:ENST00000600328Re-query CCDS DB by Protein ID:ENSP00000470780
Original member Current member NCBI NM_025249.4 NP_079525.1 Accepted alive Link to Nucleotide Sequence:NM_025249.4Link to Protein Sequence:NP_079525.1Re-query CCDS DB by Nucleotide ID:NM_025249Re-query CCDS DB by Protein ID:NP_079525Link to BLAST:NP_079525.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079525.1 1180 Q9H0B3-1 1180 100% 0 0

Chromosomal Locations for CCDS 32958.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 18257180 18258106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18264924 18267526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18269466 18269478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3543 nt):
ATGACCCTTCAAGGCAGAGCTGACCTGTCCGGTAATCAAGGCAATGCAGCCGGCCGCCTAGCTACAGTTC
ACGAGCCAGTTGTCACCCAGTGGGCGGTGCATCCTCCAGCCCCCGCTCACCCCAGTCTCCTGGACAAAAT
GGAGAAAGCGCCTCCACAGCCCCAGCACGAGGGCCTCAAGTCCAAGGAGCATCTTCCGCAACAGCCTGCC
GAAGGCAAGACGGCGTCCCGCCGCGTCCCACGCCTCCGGGCTGTGGTCGAGAGCCAGGCCTTCAAGAACA
TCCTGGTAGACGAGATGGACATGATGCACGCCCGTGCAGCCACGCTCATCCAAGCCAACTGGAGGGGCTA
TTGGCTCCGGCAGAAGCTGATTTCCCAGATGATGGCGGCCAAGGCCATCCAGGAGGCCTGGCGGCGCTTC
AACAAGAGACACATCCTTCACTCCAGCAAGTCGTTGGTAAAGAAAACGAGGGCGGAGGAGGGGGACATAC
CTTATCACGCCCCACAGCAGGTGCGCTTCCAGCATCCGGAAGAGAACCGCCTTCTGTCCCCGCCCATCAT
GGTGAACAAGGAGACCCAGTTCCCTTCCTGTGACAATCTGGTCCTCTGCAGACCCCAGTCGTCCCCCCTC
CTGCAGCCCCCAGCAGCTCAGGGTACCCCAGAGCCCTGTGTGCAGGGTCCTCATGCTGCCAGAGTCCGGG
GGCTGGCCTTCCTGCCACACCAGACGGTCACCATCAGATTTCCCTGCCCAGTGAGTCTGGACGCAAAATG
CCAGCCATGCCTGCTGACCAGAACCATCAGAAGCACCTGCCTCGTCCACATAGAGGGTGACTCAGTGAAG
ACCAAACGTGTAAGTGCCCGGACCAACAAAGCCAGGGCTCCGGAGACACCATTGTCCAGAAGGTATGACC
AGGCAGTTACGAGACCATCCAGAGCCCAAACCCAGGGCCCTGTGAAAGCAGAGACCCCCAAAGCCCCCTT
CCAGATATGTCCAGGGCCCATGATCACCAAGACTCTACTCCAGACATATCCAGTGGTCTCCGTGACCCTG
CCACAGACATATCCAGCGTCCACGATGACCACCACCCCACCCAAGACTAGCCCAGTTCCCAAAGTAACAA
TAATCAAGACCCCAGCCCAGATGTATCCGGGGCCCACAGTGACCAAAACTGCACCTCACACATGCCCCAT
GCCCACAATGACCAAGATCCAGGTACACCCCACAGCCTCCAGAACTGGCACCCCACGGCAGACATGCCCT
GCGACCATCACGGCAAAGAACCGACCTCAGGTTTCCCTTCTGGCTTCCATCATGAAGAGCCTGCCCCAGG
TATGCCCGGGGCCTGCGATGGCAAAGACCCCACCCCAGATGCACCCGGTCACCACCCCAGCCAAAAACCC
ATTGCAAACATGTCTGTCAGCCACAATGTCCAAGACTTCATCCCAGAGGAGCCCAGTTGGGGTGACCAAG
CCCTCACCCCAGACCCGCCTGCCAGCCATGATAACCAAGACCCCAGCCCAGTTACGCTCGGTGGCCACCA
TCCTCAAGACTCTGTGTCTGGCCTCTCCAACAGTGGCAAATGTCAAGGCTCCACCCCAAGTGGCGGTAGC
AGCCGGAACTCCCAACACCTCAGGCTCCATCCATGAGAACCCACCCAAGGCCAAGGCCACCGTGAATGTG
AAGCAGGCTGCAAAGGTGGTGAAAGCCTCATCCCCCTCCTATTTGGCTGAGGGGAAGATCAGGTGCCTGG
CTCAACCACATCCGGGAACTGGGGTCCCCAGGGCTGCAGCTGAGCTTCCTTTGGAAGCCGAGAAAATCAA
GACTGGCACCCAGAAACAGGCGAAAACAGACATGGCATTTAAGACCAGTGTGGCAGTGGAAATGGCTGGG
GCTCCATCCTGGACAAAAGTTGCTGAGGAAGGGGACAAGCCACCTCACGTGTATGTGCCTGTAGACATGG
CTGTCACCCTGCCCCGGGGACAGCTGGCTGCCCCACTGACCAATGCCTCATCCCAGAGACATCCACCCTG
CCTGTCCCAGAGACCACTGGCCGCCCCGCTGACCAAGGCCTCATCTCAGGGACATCTGCCCACTGAGCTG
ACCAAGACCCCATCCCTGGCCCATCTGGACACCTGTCTGAGCAAGATGCATTCCCAGACACATCTGGCCA
CAGGTGCCGTGAAGGTCCAGTCCCAAGCGCCTCTAGCCACCTGTCTGACCAAGACGCAGTCCCGGGGGCA
GCCGATCACAGACATAACCACGTGCCTCATCCCAGCGCACCAGGCTGCTGATCTCAGCAGCAACACCCAC
TCCCAGGTGCTCCTAACAGGGTCCAAGGTGTCCAACCACGCCTGCCAGCGCCTCGGTGGCCTCAGCGCCC
CACCCTGGGCCAAGCCAGAGGACAGACAGACCCAGCCACAGCCCCACGGACACGTGCCGGGGAAGACCAC
TCAGGGGGGACCATGCCCGGCAGCCTGTGAGGTCCAGGGTATGCTGGTGCCGCCGATGGCACCCACCGGC
CATTCCACATGCAACGTTGAGTCCTGGGGAGACAACGGAGCCACACGTGCCCAGCCATCAATGCCCGGCC
AGGCGGTGCCCTGCCAGGAGGACACGGGCCCCGCGGACGCTGGTGTGGTTGGTGGCCAATCGTGGAACCG
CGCATGGGAGCCAGCCAGGGGTGCTGCGTCCTGGGACACCTGGCGCAACAAGGCGGTGGTGCCTCCCAGG
CGGTCCGGGGAGCCAATGGTGTCCATGCAGGCTGCAGAGGAGATCCGCATCCTCGCAGTGATCACTATCC
AGGCGGGCGTCCGTGGCTACCTGGCGCGTCGCAGGATCCGGCTGTGGCACCGGGGGGCCATGGTCATCCA
AGCTACTTGGCGCGGCTACCGTGTGCGGCGGAACCTGGCACACCTCTGCAGAGCCACCACGACCATCCAG
TCTGCCTGGCGCGGCTACAGCACCCGCCGGGACCAAGCCCGGCACTGGCAGATGCTCCACCCCGTCACGT
GGGTGGAGCTGGGCAGCCGGGCCGGGGTCATGTCTGACCGAAGCTGGTTCCAGGATGGCAGAGCCAGGAC
AGTATCTGACCATCGCTGCTTCCAGTCCTGCCAGGCACACGCTTGCAGCGTCTGCCACTCCCTGAGCTCC
AGGATCGGGAGCCCGCCCAGCGTGGTGATGCTAGTGGGCTCCAGCCCTCGCACCTGTCATACCTGTGGAC
GCACACAGCCCACCCGTGTGGTGCAGGGCATGGGCCAGGGCACTGAGGGCCCCGGGGCAGTGTCTTGGGC
CTCCGCCTACCAGCTGGCTGCCCTGAGTCCCAGGCAGCCGCATCGCCAGGACAAAGCGGCCACAGCCATC
CAGTCCGCCTGGAGGGGCTTTAAGATCCGCCAGCAGATGAGGCAGCAGCAAATGGCAGCGAAGATAGTTC
AAGCCACCTGGCGAGGCCACCATACCCGGAGCTGTCTGAAGAACACAGAGGCGCTCTTGGGACCAGCAGA
CCCCTCGGCCAGCTCACGGCACATGCATTGGCCTGGCATCTAG

Translation (1180 aa):
MTLQGRADLSGNQGNAAGRLATVHEPVVTQWAVHPPAPAHPSLLDKMEKAPPQPQHEGLKSKEHLPQQPA
EGKTASRRVPRLRAVVESQAFKNILVDEMDMMHARAATLIQANWRGYWLRQKLISQMMAAKAIQEAWRRF
NKRHILHSSKSLVKKTRAEEGDIPYHAPQQVRFQHPEENRLLSPPIMVNKETQFPSCDNLVLCRPQSSPL
LQPPAAQGTPEPCVQGPHAARVRGLAFLPHQTVTIRFPCPVSLDAKCQPCLLTRTIRSTCLVHIEGDSVK
TKRVSARTNKARAPETPLSRRYDQAVTRPSRAQTQGPVKAETPKAPFQICPGPMITKTLLQTYPVVSVTL
PQTYPASTMTTTPPKTSPVPKVTIIKTPAQMYPGPTVTKTAPHTCPMPTMTKIQVHPTASRTGTPRQTCP
ATITAKNRPQVSLLASIMKSLPQVCPGPAMAKTPPQMHPVTTPAKNPLQTCLSATMSKTSSQRSPVGVTK
PSPQTRLPAMITKTPAQLRSVATILKTLCLASPTVANVKAPPQVAVAAGTPNTSGSIHENPPKAKATVNV
KQAAKVVKASSPSYLAEGKIRCLAQPHPGTGVPRAAAELPLEAEKIKTGTQKQAKTDMAFKTSVAVEMAG
APSWTKVAEEGDKPPHVYVPVDMAVTLPRGQLAAPLTNASSQRHPPCLSQRPLAAPLTKASSQGHLPTEL
TKTPSLAHLDTCLSKMHSQTHLATGAVKVQSQAPLATCLTKTQSRGQPITDITTCLIPAHQAADLSSNTH
SQVLLTGSKVSNHACQRLGGLSAPPWAKPEDRQTQPQPHGHVPGKTTQGGPCPAACEVQGMLVPPMAPTG
HSTCNVESWGDNGATRAQPSMPGQAVPCQEDTGPADAGVVGGQSWNRAWEPARGAASWDTWRNKAVVPPR
RSGEPMVSMQAAEEIRILAVITIQAGVRGYLARRRIRLWHRGAMVIQATWRGYRVRRNLAHLCRATTTIQ
SAWRGYSTRRDQARHWQMLHPVTWVELGSRAGVMSDRSWFQDGRARTVSDHRCFQSCQAHACSVCHSLSS
RIGSPPSVVMLVGSSPRTCHTCGRTQPTRVVQGMGQGTEGPGAVSWASAYQLAALSPRQPHRQDKAATAI
QSAWRGFKIRQQMRQQQMAAKIVQATWRGHHTRSCLKNTEALLGPADPSASSRHMHWPGI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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