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Report for CCDS42458.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42458.1 Public Homo sapiens 19 IZUMO4 24 110 108 CCDS HistoryNCBI Gene:113177Re-query CCDS DB by CCDS ID:42458.1Re-query CCDS DB by GeneID:113177See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42458.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000395301.8 ENSP00000378712.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000395301.8Link to Ensembl Protein Viewer:ENSP00000378712.3Re-query CCDS DB by Nucleotide ID:ENST00000395301Re-query CCDS DB by Protein ID:ENSP00000378712
Original member Current member NCBI NM_001039846.2 NP_001034935.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001039846.2Link to Protein Sequence:NP_001034935.1Re-query CCDS DB by Nucleotide ID:NM_001039846Re-query CCDS DB by Protein ID:NP_001034935Link to BLAST:NP_001034935.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034935.1 232 Q1ZYL8-1 232 100% 0 0

Chromosomal Locations for CCDS 42458.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 2096946 2097162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 2097252 2097332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 2097424 2097495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 2097929 2097955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 2098052 2098127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 2098287 2098334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 2098436 2098450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 2098787 2098804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 2098976 2099029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 2099255 2099345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (699 nt):
ATGGCCCTGCTGCTGTGCCTGGTGTGCCTGACGGCGGCGCTGGCCCACGGCTGTCTGCACTGCCACAGCA
ACTTCTCCAAGAAGTTCTCCTTCTACCGCCACCATGTGAACTTCAAGTCCTGGTGGGTGGGCGACATCCC
CGTGTCAGGGGCGCTGCTCACCGACTGGAGCGACGACACGATGAAGGAGCTGCACCTGGCCATCCCCGCC
AAGATCACCCGGGAGAAGCTGGACCAAGTGGCGACAGCAGTGTACCAGATGATGGATCAGCTGTACCAGG
GGAAGATGTACTTCCCCGGGTATTTCCCCAACGAGCTGCGAAACATCTTCCGGGAGCAGGTGCACCTCAT
CCAGAACGCCATCATCGAAAGCCGCATCGACTGTCAGCACCGCTGTGGCATCTTCCAGTACGAGACCATC
TCCTGCAACAACTGCACAGACTCGCACGTCGCCTGCTTTGGCTATAACTGCGAGTCCTCGGCGCAGTGGA
AGTCAGCTGTCCAGGGCCTCCTGAACTACATAAATAACTGGCACAAACAGGACACGAGCATGAGACCACG
CTCCTCTGCCTTCTCCTGGCCTGGGACACACAGAGCCACCCCGGCCTTCCTGGTATCGCCAGCCTTAAGG
TGTCTGGAGCCCCCACACTTGGCCAACCTGACCTTGGAAGATGCTGCTGAGTGTCTCAAGCAGCACTGA

Translation (232 aa):
MALLLCLVCLTAALAHGCLHCHSNFSKKFSFYRHHVNFKSWWVGDIPVSGALLTDWSDDTMKELHLAIPA
KITREKLDQVATAVYQMMDQLYQGKMYFPGYFPNELRNIFREQVHLIQNAIIESRIDCQHRCGIFQYETI
SCNNCTDSHVACFGYNCESSAQWKSAVQGLLNYINNWHKQDTSMRPRSSAFSWPGTHRATPAFLVSPALR
CLEPPHLANLTLEDAAECLKQH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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