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Report for CCDS11877.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11877.1 Public Homo sapiens 18 RIOK3 24 110 108 CCDS HistoryNCBI Gene:8780Re-query CCDS DB by CCDS ID:11877.1Re-query CCDS DB by GeneID:8780See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11877.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000339486.8 ENSP00000341874.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000339486.8Link to Ensembl Protein Viewer:ENSP00000341874.3Re-query CCDS DB by Nucleotide ID:ENST00000339486Re-query CCDS DB by Protein ID:ENSP00000341874
Original member Current member NCBI NM_003831.5 NP_003822.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003831.5Link to Protein Sequence:NP_003822.2Re-query CCDS DB by Nucleotide ID:NM_003831Re-query CCDS DB by Protein ID:NP_003822Link to BLAST:NP_003822.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003822.2 519 O14730-1 519 100% 0 0

Chromosomal Locations for CCDS 11877.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 23453440 23453502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 23462964 23463079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 23463967 23464112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 23464206 23464313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 23464519 23464628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 23466133 23466276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 23467399 23467526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 23473429 23473626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 23474948 23475107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 23477006 23477086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 23477179 23477268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 23479317 23479424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 23481172 23481279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1560 nt):
ATGGATCTGGTAGGAGTGGCATCGCCTGAGCCCGGGACGGCAGCGGCCTGGGGACCCAGCAAGTGTCCAT
GGGCTATTCCTCAAAATACAATATCTTGTTCTTTGGCTGATGTAATGAGTGAACAGCTGGCCAAAGAATT
GCAGTTAGAAGAAGAAGCTGCCGTTTTTCCTGAAGTTGCTGTTGCTGAAGGACCATTTATTACTGGAGAA
AACATTGATACTTCCAGTGACCTTATGCTGGCTCAGATGCTACAGATGGAATATGACAGAGAATATGATG
CACAGCTTAGGCGTGAAGAAAAAAAATTCAATGGAGATAGCAAAGTTTCCATTTCCTTTGAAAATTATCG
AAAAGTGCATCCTTATGAAGACAGCGATAGCTCTGAAGATGAGGTTGACTGGCAGGATACTCGTGATGAT
CCCTACAGACCAGCAAAACCGGTTCCCACTCCTAAAAAGGGCTTTATTGGAAAAGGAAAAGATATCACCA
CCAAACATGATGAAGTAGTATGTGGGAGAAAGAACACAGCAAGAATGGAAAATTTTGCACCTGAGTTTCA
GGTAGGAGATGGAATTGGAATGGATTTAAAACTATCAAACCATGTTTTCAATGCTTTAAAACAACATGCC
TACTCAGAAGAACGTCGAAGTGCCCGCCTACATGAGAAAAAGGAGCATTCTACAGCAGAAAAAGCAGTTG
ATCCTAAGACACGTTTACTTATGTATAAAATGGTCAACTCTGGAATGTTGGAGACAATCACTGGCTGTAT
TAGTACAGGAAAGGAGTCTGTTGTCTTTCATGCATATGGAGGGAGCATGGAGGATGAAAAGGAAGATAGT
AAAGTTATACCTACAGAATGTGCCATCAAGGTATTTAAAACAACCCTTAATGAATTTAAGAATCGTGACA
AATATATTAAAGATGATTTCAGGTTTAAAGATCGCTTCAGTAAACTAAATCCACGTAAGATCATCCGCAT
GTGGGCAGAAAAAGAAATGCACAATCTCGCAAGAATGCAGAGAGCTGGAATTCCTTGTCCAACAGTTGTA
CTACTGAAGAAACACATTTTAGTTATGTCTTTTATTGGCCATGATCAAGTTCCAGCCCCTAAATTAAAAG
AAGTAAAGCTCAATAGTGAAGAAATGAAAGAAGCCTACTATCAAACTCTTCATTTGATGCGGCAGTTATA
TCATGAATGTACGCTTGTCCATGCTGACCTCAGTGAGTATAACATGCTGTGGCATGCTGGAAAGGTCTGG
TTGATCGATGTCAGTCAGTCAGTAGAACCTACCCACCCTCACGGCCTGGAGTTCTTGTTCCGGGACTGCA
GGAATGTCTCGCAGTTTTTCCAGAAAGGAGGAGTCAAGGAAGCCCTTAGTGAACGAGAACTCTTCAATGC
TGTTTCAGGCTTAAACATCACAGCAGATAATGAAGCTGATTTTTTAGCTGAGATAGAAGCTTTGGAGAAA
ATGAATGAAGATCACGTTCAGAAGAATGGAAGGAAAGCTGCTTCATTTTTGAAAGATGATGGAGACCCAC
CACTACTATATGATGAATAG

Translation (519 aa):
MDLVGVASPEPGTAAAWGPSKCPWAIPQNTISCSLADVMSEQLAKELQLEEEAAVFPEVAVAEGPFITGE
NIDTSSDLMLAQMLQMEYDREYDAQLRREEKKFNGDSKVSISFENYRKVHPYEDSDSSEDEVDWQDTRDD
PYRPAKPVPTPKKGFIGKGKDITTKHDEVVCGRKNTARMENFAPEFQVGDGIGMDLKLSNHVFNALKQHA
YSEERRSARLHEKKEHSTAEKAVDPKTRLLMYKMVNSGMLETITGCISTGKESVVFHAYGGSMEDEKEDS
KVIPTECAIKVFKTTLNEFKNRDKYIKDDFRFKDRFSKLNPRKIIRMWAEKEMHNLARMQRAGIPCPTVV
LLKKHILVMSFIGHDQVPAPKLKEVKLNSEEMKEAYYQTLHLMRQLYHECTLVHADLSEYNMLWHAGKVW
LIDVSQSVEPTHPHGLEFLFRDCRNVSQFFQKGGVKEALSERELFNAVSGLNITADNEADFLAEIEALEK
MNEDHVQKNGRKAASFLKDDGDPPLLYDE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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