NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS45832.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45832.1 Public Homo sapiens 18 SEH1L 24 110 108 CCDS HistoryNCBI Gene:81929Re-query CCDS DB by CCDS ID:45832.1Re-query CCDS DB by GeneID:81929See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45832.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000262124.15 ENSP00000262124.10 Accepted alive Link to Ensembl Transcript Viewer:ENST00000262124.15Link to Ensembl Protein Viewer:ENSP00000262124.10Re-query CCDS DB by Nucleotide ID:ENST00000262124Re-query CCDS DB by Protein ID:ENSP00000262124
Original member Current member NCBI NM_031216.4 NP_112493.2 Accepted alive Link to Nucleotide Sequence:NM_031216.4Link to Protein Sequence:NP_112493.2Re-query CCDS DB by Nucleotide ID:NM_031216Re-query CCDS DB by Protein ID:NP_112493Link to BLAST:NP_112493.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_112493.2 360 Q96EE3-2 360 100% 0 0

Chromosomal Locations for CCDS 45832.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 12948122 12948232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12951855 12951905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12955463 12955609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12963160 12963371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12971153 12971251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12978752 12978892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12982518 12982675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12984040 12984190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12985240 12985252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1083 nt):
ATGTTTGTGGCTCGCAGCATCGCGGCGGACCACAAGGATCTCATCCACGATGTCTCTTTCGACTTCCACG
GGCGGCGGATGGCAACCTGCTCCAGCGATCAGAGCGTTAAGGTCTGGGATAAAAGTGAAAGTGGTGATTG
GCATTGTACTGCTAGCTGGAAGACACATAGTGGATCTGTATGGCGTGTGACATGGGCCCATCCTGAATTT
GGGCAGGTTTTGGCTTCCTGTTCTTTTGACCGAACAGCTGCTGTATGGGAAGAAATAGTAGGAGAATCAA
ATGATAAACTGCGAGGACAGAGCCACTGGGTTAAAAGGACAACTCTGGTGGATAGCAGAACATCTGTTAC
TGATGTGAAGTTTGCTCCCAAGCACATGGGTCTTATGTTAGCAACCTGTTCCGCAGATGGTATAGTAAGA
ATCTATGAGGCACCAGATGTTATGAATCTCAGCCAGTGGTCTTTGCAGCATGAGATCTCATGTAAGCTAA
GCTGTAGTTGTATTTCTTGGAACCCTTCAAGCTCTCGTGCTCATTCCCCCATGATCGCCGTAGGAAGTGA
TGACAGTAGCCCCAACGCAATGGCCAAGGTTCAGATTTTTGAATATAATGAAAACACCAGGAAATATGCA
AAAGCTGAAACTCTTATGACAGTCACTGATCCTGTTCATGATATTGCATTCGCTCCAAATTTGGGAAGAT
CTTTCCATATTCTAGCAATAGCGACCAAAGATGTGAGAATTTTTACATTAAAGCCTGTGAGGAAAGAACT
GACTTCCTCTGGTGGGCCAACAAAGTTTGAAATCCATATAGTGGCTCAGTTCGATAATCATAATTCTCAG
GTCTGGCGAGTGAGTTGGAATATAACAGGAACGGTGCTAGCATCTTCAGGAGATGATGGGTGTGTAAGAT
TGTGGAAAGCTAATTATATGGACAATTGGAAGTGTACTGGTATTTTGAAAGGTAATGGGAGCCCAGTCAA
TGGGAGTTCTCAGCAGGGAACCTCAAATCCTTCCCTAGGTTCAACTATTCCAAGTCTTCAGAATTCATTA
AATGGATCTTCTGCTGGCAGAAAGCACAGCTGA

Translation (360 aa):
MFVARSIAADHKDLIHDVSFDFHGRRMATCSSDQSVKVWDKSESGDWHCTASWKTHSGSVWRVTWAHPEF
GQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVR
IYEAPDVMNLSQWSLQHEISCKLSCSCISWNPSSSRAHSPMIAVGSDDSSPNAMAKVQIFEYNENTRKYA
KAETLMTVTDPVHDIAFAPNLGRSFHILAIATKDVRIFTLKPVRKELTSSGGPTKFEIHIVAQFDNHNSQ
VWRVSWNITGTVLASSGDDGCVRLWKANYMDNWKCTGILKGNGSPVNGSSQQGTSNPSLGSTIPSLQNSL
NGSSAGRKHS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH