NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS32496.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32496.1 Public Homo sapiens 16 TAF1C 24 110 108 CCDS HistoryNCBI Gene:9013Re-query CCDS DB by CCDS ID:32496.1Re-query CCDS DB by GeneID:9013See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 32496.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000567759.5 ENSP00000455265.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000567759.5Link to Ensembl Protein Viewer:ENSP00000455265.1Re-query CCDS DB by Nucleotide ID:ENST00000567759Re-query CCDS DB by Protein ID:ENSP00000455265
Original member Current member NCBI NM_005679.4 NP_005670.4 Accepted alive Link to Nucleotide Sequence:NM_005679.4Link to Protein Sequence:NP_005670.4Re-query CCDS DB by Nucleotide ID:NM_005679Re-query CCDS DB by Protein ID:NP_005670Link to BLAST:NP_005670.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005670.4 869 Q15572-1 869 100% 0 0

Chromosomal Locations for CCDS 32496.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 84178941 84179851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 84179946 84180083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 84180170 84180344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 84181043 84181186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 84181328 84181463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 84181592 84181663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 84181746 84182058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 84182202 84182440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 84183076 84183149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 84183244 84183333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 84183410 84183507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 84183697 84183778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 84184851 84184988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2610 nt):
ATGGACTTCCCCAGCTCCCTCCGCCCTGCATTGTTTCTGACCGGCCCCCTTGGTCTGAGCGACGTCCCTG
ACCTCTCTTTCATGTGCAGCTGGCGAGACGCACTGACTCTGCCAGAGGCCCAGCCCCAGAACTCAGAGAA
TGGGGCACTGCATGTGACCAAGGACCTGCTGTGGGAGCCGGCAACCCCTGGGCCTCTCCCCATGCTGCCT
CCCCTCATCGATCCCTGGGACCCTGGCCTGACTGCCCGGGACCTGCTTTTCCGCGGAGGGTGCCGGTATC
GGAAGCGGCCCCGAGTCGTGCTGGATGTGACTGAGCAGATCAGCCGGTTCCTCTTGGATCATGGAGACGT
AGCCTTTGCGCCCCTGGGGAAGCTGATGCTGGAGAATTTCAAGCTGGAGGGAGCGGGGAGCCGCACTAAG
AAGAAGACAGTGGTCAGTGTGAAGAAGCTGCTCCAGGACCTCGGTGGACACCAGCCCTGGGGGTGTCCCT
GGGCTTACCTCAGCAACCGACAGCGCCGCTTCTCTATCCTCGGGGGCCCCATCCTGGGCACGTCGGTGGC
GAGCCACTTGGCAGAGCTGCTGCACGAGGAGCTGGTGCTGCGGTGGGAGCAGCTGCTTCTGGATGAGGCC
TGCACTGGGGGCGCGCTGGCCTGGGTTCCTGGAAGGACACCCCAGTTCGGGCAGCTGGTCTACCCTGCTG
GAGGCGCCCAGGACAGGCTGCATTTCCAAGAGGTCGTTCTGACCCCAGGTGACAATCCCCAATTCCTTGG
GAAACCTGGACGCATCCAGCTCCAGGGACCTGTCCGGCAAGTGGTGACATGCACCGTCCAGGGAGAAAGT
AAGGCCCTTATATACACTTTCCTCCCTCACTGGCTGACCTGCTACCTGACCCCTGGCCCTTTCCATCCCT
CCTCAGCTCTGCTGGCCGTCCGCTCTGACTACCACTGTGCCGTGTGGAAGTTTGGTAAACAGTGGCAGCC
AACCCTTCTGCAGGCAATGCAGGTGGAGAAAGGGGCCACGGGGATCAGCCTCAGCCCTCACCTGCCCGGG
GAGCTGGCCATCTGCAGCCGCTCGGGAGCCGTCTGCCTGTGGAGCCCTGAGGATGGGCTGCGGCAAATCT
ACAGGGACCCTGAGACCCTCGTGTTCCGGGACTCCTCTTCGTGGCGTTGGGCAGACTTCACTGCGCACCC
TCGGGTGCTGACCGTGGGTGACCGCACCGGAGTGAAGATGCTGGACACTCAGGGCCCGCCGGGCTGTGGT
CTGTTGCTTTTTCGTTTGGGGGCAGAGGCTTCGTGCCAGAAAGGGGAACGTGTCCTGCTTACCCAGTACC
TGGGGCACTCCAGCCCCAAATGCCTCCCCCCTACTCTTCATCTCGTCTGTACCCAGTTCTCTCTCTACCT
AGTGGACGAGCGCCTTCCCCTGGTGCCGATGCTGAAGTGGAACCATGGCCTCCCCTCCCCGCTCCTGCTG
GCCCGACTGCTGCCTCCGCCCCGGCCCAGCTGCGTGCAGCCCCTGCTCCTCGGAGGCCAGGGTGGGCAGC
TGCAGCTGCTGCACCTGGCAGGAGAAGGGGCGTCGGTGCCCCGCCTGGCAGGCCCCCCCCAGTCTCTTCC
TTCCAGGATCGACTCCCTCCCTGCATTTCCTCTGCTGGAGCCTAAGATCCAGTGGCGGCTGCAGGAGCGC
CTGAAAGCACCGACCATAGGTCTGGCTGCCGTCGTCCCGCCCTTGCCCTCAGCGCCCACACCAGGCCTGG
TGCTCTTCCAGCTCTCGGCGGCGGGAGATGTCTTCTACCAGCAGCTCCGCCCCCAGGTGGACTCCAGCCT
CCGCAGAGATGCTGGGCCTCCTGGCGACACCCAACCTGACTGCCATGCCCCCACAGCTTCCTGGACCTCC
CAGGACACTGCCGGCTGCAGCCAGTGGCTGAAGGCCCTGCTAAAAGTGCCCCTGGCTCCTCCTGTGTGGA
CAGCACCCACCTTCACCCACCGCCAGATGCTGGGCAGCACAGAGCTGCGGAGGGAGGAAGAGGAAGGGCA
GCGGCTGGGTGTGCTCCGCAAGGCCATGGCCCGAGGGCAGCTCCTGCTGCAGAGAGACCTGGGCTCCCTC
CCTGCGGCAGAGCCACCCCCTGCACCCGAGTCAGGCCTAGAGGACAAGCTCAGTGAGCGCCTGGGGGAAG
CCTGGGCAGGCCGAGGGGCTGCCTGGTGGGAGAGGCAGCAGGGCAGGACCTCGGAGCCCGGGAGACAGAC
CAGGCGGCCCAAGCGCCGGACCCAGCTGTCCAGCAGCTTTTCGCTCAGTGGCCATGTGGATCCCTCAGAG
GACACCAGCTCCCCTCATAGCCCTGAGTGGCCACCTGCTGATGCTCTGCCCCTGCCCCCCACGACCCCGC
CCTCCCAGGAGTTGACTCCGGATGCATGCGCCCAGGGCGTCCCATCAGAGCAGCGGCAGATGCTCCGTGA
CTACATGGCCAAGCTACCACCCCAGAGGGACACCCCAGGCTGTGCCACCACACCTCCCCACTCCCAGGCC
TCCAGCGTCCGGGCCACTCGCTCCCAGCAGCACACACCCGTCCTCTCTAGCTCTCAGCCCCTCCGGAAGA
AGCCTCGAATGGGCTTCTGA

Translation (869 aa):
MDFPSSLRPALFLTGPLGLSDVPDLSFMCSWRDALTLPEAQPQNSENGALHVTKDLLWEPATPGPLPMLP
PLIDPWDPGLTARDLLFRGGCRYRKRPRVVLDVTEQISRFLLDHGDVAFAPLGKLMLENFKLEGAGSRTK
KKTVVSVKKLLQDLGGHQPWGCPWAYLSNRQRRFSILGGPILGTSVASHLAELLHEELVLRWEQLLLDEA
CTGGALAWVPGRTPQFGQLVYPAGGAQDRLHFQEVVLTPGDNPQFLGKPGRIQLQGPVRQVVTCTVQGES
KALIYTFLPHWLTCYLTPGPFHPSSALLAVRSDYHCAVWKFGKQWQPTLLQAMQVEKGATGISLSPHLPG
ELAICSRSGAVCLWSPEDGLRQIYRDPETLVFRDSSSWRWADFTAHPRVLTVGDRTGVKMLDTQGPPGCG
LLLFRLGAEASCQKGERVLLTQYLGHSSPKCLPPTLHLVCTQFSLYLVDERLPLVPMLKWNHGLPSPLLL
ARLLPPPRPSCVQPLLLGGQGGQLQLLHLAGEGASVPRLAGPPQSLPSRIDSLPAFPLLEPKIQWRLQER
LKAPTIGLAAVVPPLPSAPTPGLVLFQLSAAGDVFYQQLRPQVDSSLRRDAGPPGDTQPDCHAPTASWTS
QDTAGCSQWLKALLKVPLAPPVWTAPTFTHRQMLGSTELRREEEEGQRLGVLRKAMARGQLLLQRDLGSL
PAAEPPPAPESGLEDKLSERLGEAWAGRGAAWWERQQGRTSEPGRQTRRPKRRTQLSSSFSLSGHVDPSE
DTSSPHSPEWPPADALPLPPTTPPSQELTPDACAQGVPSEQRQMLRDYMAKLPPQRDTPGCATTPPHSQA
SSVRATRSQQHTPVLSSSQPLRKKPRMGF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH