CCDS Report for Consensus CDS

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Report for CCDS42126.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
42126.1	Public	Homo sapiens	16	TMC5	24	110	108

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42126.1

Original	Current	Source	Nucleotide ID	Protein ID	MANE	Status in CCDS	Seq. Status	Links
		EBI	ENST00000381414.8	ENSP00000370822.4		Accepted	alive
		NCBI	NM_001105249.1	NP_001098719.1		Accepted	alive

RefSeq	Length	Related UniProtKB/SwissProt	Length	Identity	Gaps	Mismatches
NP_001098719.1	948	Q6UXY8-2	948	100%	0	0

Chromosomal Locations for CCDS 42126.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)

Genome Browser links:

Chromosome	Start	Stop
16	19440039	19440826
16	19444081	19444250
16	19449542	19449631
16	19460235	19460334
16	19463280	19463367
16	19463776	19464024
16	19466082	19466233
16	19469681	19469825
16	19472088	19472243
16	19474125	19474276
16	19477440	19477518
16	19479431	19479528
16	19481370	19481465
16	19486945	19487020
16	19487193	19487326
16	19492150	19492228
16	19494262	19494366
16	19497121	19497163
16	19497920	19497966

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2847 nt):
ATGTCTGCCTACTACAGGAATAACTGGTCTGAGGAAGACCCAGATTACCCTGACTATTCAGGGTCTCAGA ACCGTACGCAGGGGTATTTGAAAACTCAAGGTTATCCAGATGTTCCAGGTCCTCTGAACAATCCAGACTA CCCCGGCACCAGGAGCAATCCATACTCTGTAGCCTCCAGAACACGTCCAGACTATCCTGGGTCTCTGGCA GAACCAAATTATCCTAGATCTCTGAGTAATCCAGACTATTCTGGCACCAGAAGCAATGCATACTCTGCAG CCTCTAGAACAAGCCCAGACCATCCTACCTCTCTACCAGAGCCAGATTATAGTGAATTTCAGAGTCATCC CTACCACCGAGCATCATCCAGACAACCAGACTACCCTGGATCTCAACGAAATCCTGATTTTGCAGGCTCC AGCAGCAGTGGAAACTATGCAGGCTCCAGAACACATCCAGATCATTTTGGCTCCTTAGAACCGGACTACC CTGGAGCTCAGAGCAACTCTGATCATCCTGGACCCAGAGCCAATTTGAACCATCCAGGATCCAGAAAGAA TCTGGAACATACAAGTTTTAGAATCAATCCATACGCAGACTCTCTGGGAAAGCCTGATTATCCAGGCGCT GACATTCAACCTAACTCTCCACCCTTTTTTGGGGAGCCAGACTATCCCAGTGCTGAGGACAATCAGAACT TGCCAAGCACTTGGAGAGAACCTGATTATTCAGATGCTGAGAATGGTCATGATTATGGCTCTTCTGAGAC CCCAAAGATGACCAGGGGGGTGCTCAGCAGAACATCTTCAATCCAGCCCTCATTTCGTCACAGGAGTGAT GACCCCGTGGGCAGTCTTTGGGGAGAGAATGATTACCCTGAAGGCATTGAAATGGCATCCATGGAGATGG CAAACTCATATGGCCACTCTCTGCCAGGTGCTCCTGGAAGTGGCTATGTGAACCCTGCTTATGTAGGTGA AAGTGGTCCTGTCCATGCTTATGGAAACCCACCATTGTCTGAATGTGATTGGCACAAGTCACCCCAAGGA CAGAAGTTAATCGCATCCCTTATACCCATGACATCCAGAGACAGAATTAAAGCCATCAGGAACCAGCCAA GGACCATGGAAGAGAAAAGGAACCTTAGGAAAATAGTTGACAAAGAAAAAAGCAAACAGACCCATCGTAT CCTTCAGCTCAATTGCTGTATTCAGTGTCTGAACTCCATTTCCCGGGCTTATCGGAGATCCAAGAACAGC CTGTCGGAAATTCTGAATTCCATCAGCCTGTGGCAGAAGACGCTGAAGATCATTGGAGGCAAGTTTGGAA CCAGCGTCCTCTCCTATTTCAACTTTCTGAGATGGCTTTTGAAGTTCAACATTTTCTCATTCATCCTGAA CTTCAGCTTCATCATAATCCCTCAGTTTACCGTGGCCAAAAAGAACACCCTCCAGTTCACTGGGCTGGAG TTTTTCACTGGGGTGGGTTATTTTAGGGACACAGTGATGTACTATGGCTTTTACACCAATTCCACCATCC AGCACGGGAACAGCGGGGCATCCTACAACATGCAGCTGGCCTACATCTTCACAATCGGAGCATGCTTGAC CACCTGCTTCTTCAGTTTGCTGTTCAGCATGGCCAAGTATTTCCGGAACAACTTCATTAATCCCCACATT TACTCCGGAGGGATCACCAAGCTGATCTTTTGCTGGGACTTCACTGTCACTCATGAAAAAGCTGTGAAGC TAAAACAGAAGAATCTTAGCACTGAGATAAGGGAGAACCTGTCAGAGCTCCGTCAGGAGAATTCCAAGTT GACGTTCAATCAGCTGCTGACCCGCTTCTCTGCCTACATGGTAGCCTGGGTTGTCTCTACAGGAGTGGCC ATAGCCTGCTGTGCAGCCGTTTATTACCTGGCTGAGTACAACTTAGAGTTCCTGAAGACACACAGTAACC CTGGGGCGGTGCTGTTACTGCCTTTCGTTGTGTCCTGCATTAATCTGGCCGTGCCATGCATCTACTCCAT GTTCAGGCTTGTGGAGAGGTACGAGATGCCACGGCACGAAGTCTACGTTCTCCTGATCCGAAACATCTTT TTGAAAATATCAATCATTGGCATTCTTTGTTACTATTGGCTCAACACCGTGGCCCTGTCTGGTGAAGAGT GTTGGGAAACCCTCATTGGCCAGGACATCTACCGGCTCCTTCTGATGGATTTTGTGTTCTCTTTAGTCAA TTCCTTCCTGGGGGAGTTTCTGAGGAGAATCATTGGGATGCAACTGATCACAAGTCTTGGCCTTCAGGAG TTTGACATTGCCAGGAACGTTCTAGAACTGATCTATGCACAAACTCTGGTGTGGATTGGCATCTTCTTCT GCCCCCTGCTGCCCTTTATCCAAATGATTATGCTTTTCATCATGTTCTACTCCAAAAATATCAGCCTGAT GATGAATTTCCAGCCTCCGAGCAAAGCCTGGCGGGCCTCACAGATGATGACTTTCTTCATCTTCTTGCTC TTTTTCCCATCCTTCACCGGGGTCTTGTGCACCCTGGCCATCACCATCTGGAGAATCATCACCTATCTTT ACTGGCAGATCACAGAGGGAAGGAAGATTATGATAAGGCTGCTCCATGAGCAGATCATTAATGAGGGCAA AGATAAAATGTTCCTGATAGAAAAATTGATCAAGCTGCAGGATATGGAGAAGAAAGCAAACCCCAGCTCA CTTGTTCTGGAAAGGAGAGAGGTGGAGCAACAAGGCTTTTTGCATTTGGGGGAACATGATGGCAGTCTTG ACTTGCGATCTAGAAGATCAGTTCAAGAAGGTAATCCAAGGGCCTGA
Translation (948 aa):
MSAYYRNNWSEEDPDYPDYSGSQNRTQGYLKTQGYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLA EPNYPRSLSNPDYSGTRSNAYSAASRTSPDHPTSLPEPDYSEFQSHPYHRASSRQPDYPGSQRNPDFAGS SSSGNYAGSRTHPDHFGSLEPDYPGAQSNSDHPGPRANLNHPGSRKNLEHTSFRINPYADSLGKPDYPGA DIQPNSPPFFGEPDYPSAEDNQNLPSTWREPDYSDAENGHDYGSSETPKMTRGVLSRTSSIQPSFRHRSD DPVGSLWGENDYPEGIEMASMEMANSYGHSLPGAPGSGYVNPAYVGESGPVHAYGNPPLSECDWHKSPQG QKLIASLIPMTSRDRIKAIRNQPRTMEEKRNLRKIVDKEKSKQTHRILQLNCCIQCLNSISRAYRRSKNS LSEILNSISLWQKTLKIIGGKFGTSVLSYFNFLRWLLKFNIFSFILNFSFIIIPQFTVAKKNTLQFTGLE FFTGVGYFRDTVMYYGFYTNSTIQHGNSGASYNMQLAYIFTIGACLTTCFFSLLFSMAKYFRNNFINPHI YSGGITKLIFCWDFTVTHEKAVKLKQKNLSTEIRENLSELRQENSKLTFNQLLTRFSAYMVAWVVSTGVA IACCAAVYYLAEYNLEFLKTHSNPGAVLLLPFVVSCINLAVPCIYSMFRLVERYEMPRHEVYVLLIRNIF LKISIIGILCYYWLNTVALSGEECWETLIGQDIYRLLLMDFVFSLVNSFLGEFLRRIIGMQLITSLGLQE FDIARNVLELIYAQTLVWIGIFFCPLLPFIQMIMLFIMFYSKNISLMMNFQPPSKAWRASQMMTFFIFLL FFPSFTGVLCTLAITIWRIITYLYWQITEGRKIMIRLLHEQIINEGKDKMFLIEKLIKLQDMEKKANPSS LVLERREVEQQGFLHLGEHDGSLDLRSRRSVQEGNPRA

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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