NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS53978.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53978.1 Public Homo sapiens 15 MEF2A 24 110 108 CCDS HistoryNCBI Gene:4205Re-query CCDS DB by CCDS ID:53978.1Re-query CCDS DB by GeneID:4205See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53978.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000557785.5 ENSP00000453441.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000557785.5Link to Ensembl Protein Viewer:ENSP00000453441.1Re-query CCDS DB by Nucleotide ID:ENST00000557785Re-query CCDS DB by Protein ID:ENSP00000453441
Original member Current member EBI ENST00000691492.1 ENSP00000509537.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000691492.1Link to Ensembl Protein Viewer:ENSP00000509537.1Re-query CCDS DB by Nucleotide ID:ENST00000691492Re-query CCDS DB by Protein ID:ENSP00000509537
Original member Current member NCBI NM_001130926.5 NP_001124398.1 Accepted alive Link to Nucleotide Sequence:NM_001130926.5Link to Protein Sequence:NP_001124398.1Re-query CCDS DB by Nucleotide ID:NM_001130926Re-query CCDS DB by Protein ID:NP_001124398Link to BLAST:NP_001124398.1
Original member Current member NCBI NM_001171894.5 NP_001165365.1 Accepted alive Link to Nucleotide Sequence:NM_001171894.5Link to Protein Sequence:NP_001165365.1Re-query CCDS DB by Nucleotide ID:NM_001171894Re-query CCDS DB by Protein ID:NP_001165365Link to BLAST:NP_001165365.1
Original member Current member NCBI NM_001352614.4 NP_001339543.1 Accepted alive Link to Nucleotide Sequence:NM_001352614.4Link to Protein Sequence:NP_001339543.1Re-query CCDS DB by Nucleotide ID:NM_001352614Re-query CCDS DB by Protein ID:NP_001339543Link to BLAST:NP_001339543.1
Original member Current member NCBI NM_001352615.4 NP_001339544.1 Accepted alive Link to Nucleotide Sequence:NM_001352615.4Link to Protein Sequence:NP_001339544.1Re-query CCDS DB by Nucleotide ID:NM_001352615Re-query CCDS DB by Protein ID:NP_001339544Link to BLAST:NP_001339544.1
Original member Current member NCBI NM_001365208.3 NP_001352137.1 Accepted alive Link to Nucleotide Sequence:NM_001365208.3Link to Protein Sequence:NP_001352137.1Re-query CCDS DB by Nucleotide ID:NM_001365208Re-query CCDS DB by Protein ID:NP_001352137Link to BLAST:NP_001352137.1
Original member Current member NCBI NM_001400054.1 NP_001386983.1 Accepted alive Link to Nucleotide Sequence:NM_001400054.1Link to Protein Sequence:NP_001386983.1Re-query CCDS DB by Nucleotide ID:NM_001400054Re-query CCDS DB by Protein ID:NP_001386983Link to BLAST:NP_001386983.1
Original member Current member NCBI NM_001400055.1 NP_001386984.1 Accepted alive Link to Nucleotide Sequence:NM_001400055.1Link to Protein Sequence:NP_001386984.1Re-query CCDS DB by Nucleotide ID:NM_001400055Re-query CCDS DB by Protein ID:NP_001386984Link to BLAST:NP_001386984.1
Original member Current member NCBI NM_001400056.1 NP_001386985.1 Accepted alive Link to Nucleotide Sequence:NM_001400056.1Link to Protein Sequence:NP_001386985.1Re-query CCDS DB by Nucleotide ID:NM_001400056Re-query CCDS DB by Protein ID:NP_001386985Link to BLAST:NP_001386985.1
Original member Current member NCBI NM_001400057.1 NP_001386986.1 Accepted alive Link to Nucleotide Sequence:NM_001400057.1Link to Protein Sequence:NP_001386986.1Re-query CCDS DB by Nucleotide ID:NM_001400057Re-query CCDS DB by Protein ID:NP_001386986Link to BLAST:NP_001386986.1
Original member Current member NCBI NM_001400058.1 NP_001386987.1 Accepted alive Link to Nucleotide Sequence:NM_001400058.1Link to Protein Sequence:NP_001386987.1Re-query CCDS DB by Nucleotide ID:NM_001400058Re-query CCDS DB by Protein ID:NP_001386987Link to BLAST:NP_001386987.1
Original member Current member NCBI NM_001400059.1 NP_001386988.1 Accepted alive Link to Nucleotide Sequence:NM_001400059.1Link to Protein Sequence:NP_001386988.1Re-query CCDS DB by Nucleotide ID:NM_001400059Re-query CCDS DB by Protein ID:NP_001386988Link to BLAST:NP_001386988.1
Original member Current member NCBI NM_001400060.1 NP_001386989.1 Accepted alive Link to Nucleotide Sequence:NM_001400060.1Link to Protein Sequence:NP_001386989.1Re-query CCDS DB by Nucleotide ID:NM_001400060Re-query CCDS DB by Protein ID:NP_001386989Link to BLAST:NP_001386989.1
Original member Current member NCBI NM_001400061.1 NP_001386990.1 Accepted alive Link to Nucleotide Sequence:NM_001400061.1Link to Protein Sequence:NP_001386990.1Re-query CCDS DB by Nucleotide ID:NM_001400061Re-query CCDS DB by Protein ID:NP_001386990Link to BLAST:NP_001386990.1
Original member Current member NCBI NM_001400062.1 NP_001386991.1 Accepted alive Link to Nucleotide Sequence:NM_001400062.1Link to Protein Sequence:NP_001386991.1Re-query CCDS DB by Nucleotide ID:NM_001400062Re-query CCDS DB by Protein ID:NP_001386991Link to BLAST:NP_001386991.1
Original member Current member NCBI NM_001400063.1 NP_001386992.1 Accepted alive Link to Nucleotide Sequence:NM_001400063.1Link to Protein Sequence:NP_001386992.1Re-query CCDS DB by Nucleotide ID:NM_001400063Re-query CCDS DB by Protein ID:NP_001386992Link to BLAST:NP_001386992.1
Original member Current member NCBI NM_001400064.1 NP_001386993.1 Accepted alive Link to Nucleotide Sequence:NM_001400064.1Link to Protein Sequence:NP_001386993.1Re-query CCDS DB by Nucleotide ID:NM_001400064Re-query CCDS DB by Protein ID:NP_001386993Link to BLAST:NP_001386993.1
Original member Current member NCBI NM_001400065.1 NP_001386994.1 Accepted alive Link to Nucleotide Sequence:NM_001400065.1Link to Protein Sequence:NP_001386994.1Re-query CCDS DB by Nucleotide ID:NM_001400065Re-query CCDS DB by Protein ID:NP_001386994Link to BLAST:NP_001386994.1
Original member Current member NCBI NM_001400066.1 NP_001386995.1 Accepted alive Link to Nucleotide Sequence:NM_001400066.1Link to Protein Sequence:NP_001386995.1Re-query CCDS DB by Nucleotide ID:NM_001400066Re-query CCDS DB by Protein ID:NP_001386995Link to BLAST:NP_001386995.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001124398.1 497 Q02078-6 497 100% 0 0
NP_001165365.1 497 Q02078-6 497 100% 0 0
NP_001339543.1 497 Q02078-6 497 100% 0 0
NP_001339544.1 497 Q02078-6 497 100% 0 0
NP_001352137.1 497 Q02078-6 497 100% 0 0
NP_001386983.1 497 Q02078-6 497 100% 0 0
NP_001386984.1 497 Q02078-6 497 100% 0 0
NP_001386985.1 497 Q02078-6 497 100% 0 0
NP_001386986.1 497 Q02078-6 497 100% 0 0
NP_001386987.1 497 Q02078-6 497 100% 0 0
NP_001386988.1 497 Q02078-6 497 100% 0 0
NP_001386989.1 497 Q02078-6 497 100% 0 0
NP_001386990.1 497 Q02078-6 497 100% 0 0
NP_001386991.1 497 Q02078-6 497 100% 0 0
NP_001386992.1 497 Q02078-6 497 100% 0 0
NP_001386993.1 497 Q02078-6 497 100% 0 0
NP_001386994.1 497 Q02078-6 497 100% 0 0
NP_001386995.1 497 Q02078-6 497 100% 0 0

Chromosomal Locations for CCDS 53978.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 99633120 99633173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99645561 99645764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99671323 99671454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99674393 99674612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99675399 99675458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99690241 99690428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99706729 99706855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99710634 99710760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99712390 99712771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1494 nt):
ATGGGGCGGAAGAAAATACAAATCACACGCATAATGGATGAAAGGAACCGACAGGTCACTTTTACAAAGA
GAAAGTTTGGATTAATGAAGAAAGCCTATGAACTTAGTGTGCTCTGTGACTGTGAAATAGCACTCATCAT
TTTCAACAGCTCTAACAAACTGTTTCAATATGCTAGCACTGATATGGACAAAGTTCTTCTCAAGTATACA
GAATATAATGAACCTCATGAAAGCAGAACCAACTCGGATATTGTTGAGACTTTAAGAAAGAAAGGCCTTA
ATGGTTGTGAGAGCCCTGATGCTGACGATTACTTTGAGCACAGTCCACTCTCGGAGGACAGATTCAGCAA
ACTAAATGAAGATAGTGATTTTATTTTCAAACGAGGCCCTCCTGGTCTGCCACCTCAGAACTTTTCAATG
TCTGTCACAGTTCCAGTGACCAGCCCCAATGCTTTGTCCTACACTAACCCAGGGAGTTCACTGGTGTCCC
CATCTTTGGCAGCCAGCTCAACGTTAACAGATTCAAGCATGCTCTCTCCACCTCAAACCACATTACATAG
AAATGTGTCTCCTGGAGCTCCTCAGAGACCACCAAGTACTGGCAATGCAGGTGGGATGTTGAGCACTACA
GACCTCACAGTGCCAAATGGAGCTGGAAGCAGTCCAGTGGGGAATGGATTTGTAAACTCAAGAGCTTCTC
CAAATTTGATTGGAGCTACTGGTGCAAATAGCTTAGGCAAAGTCATGCCTACAAAGTCTCCCCCTCCACC
AGGTGGTGGTAATCTTGGAATGAACAGTAGGAAACCAGATCTTCGAGTTGTCATCCCCCCTTCAAGCAAG
GGCATGATGCCTCCACTAAATACCCAGAGGATCAGTAGTTCTCAAGCCACTCAACCTCTTGCTACCCCAG
TCGTGTCTGTGACAACCCCAAGCTTGCCTCCGCAAGGACTTGTGTACTCAGCAATGCCGACTGCCTACAA
CACTGATTATTCACTGACCAGCGCTGACCTGTCAGCCCTTCAAGGCTTCAACTCGCCAGGAATGCTGTCG
CTGGGACAGGTGTCGGCCTGGCAGCAGCACCACCTAGGACAAGCAGCCCTCAGCTCTCTTGTTGCTGGAG
GGCAGTTATCTCAGGGTTCCAATTTATCCATTAATACCAACCAAAACATCAGCATCAAGTCCGAACCGAT
TTCACCTCCTCGGGATCGTATGACCCCATCGGGCTTCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CCGCCGCCACCACCGCAGCCCCAGCCACAACCCCCGCAGCCCCAGCCCCGACAGGAAATGGGGCGCTCCC
CTGTGGACAGTCTGAGCAGCTCTAGTAGCTCCTATGATGGCAGTGATCGGGAGGATCCACGGGGCGACTT
CCATTCTCCAATTGTGCTTGGCCGACCCCCAAACACTGAGGACAGAGAAAGCCCTTCTGTAAAGCGAATG
AGGATGGACGCGTGGGTGACCTAA

Translation (497 aa):
MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYT
EYNEPHESRTNSDIVETLRKKGLNGCESPDADDYFEHSPLSEDRFSKLNEDSDFIFKRGPPGLPPQNFSM
SVTVPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRNVSPGAPQRPPSTGNAGGMLSTT
DLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKVMPTKSPPPPGGGNLGMNSRKPDLRVVIPPSSK
GMMPPLNTQRISSSQATQPLATPVVSVTTPSLPPQGLVYSAMPTAYNTDYSLTSADLSALQGFNSPGMLS
LGQVSAWQQHHLGQAALSSLVAGGQLSQGSNLSINTNQNISIKSEPISPPRDRMTPSGFQQQQQQQQQQQ
PPPPPQPQPQPPQPQPRQEMGRSPVDSLSSSSSSYDGSDREDPRGDFHSPIVLGRPPNTEDRESPSVKRM
RMDAWVT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH