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Report for CCDS41942.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41942.2 Public Homo sapiens 14 SNX6 24 110 108 CCDS HistoryNCBI Gene:58533Re-query CCDS DB by CCDS ID:41942.2Re-query CCDS DB by GeneID:58533See the combined annotation on chromosome 14 in Sequence Viewer

Public Note for CCDS 41942.1
The coding region has been updated to scale back the N-terminus to one that is more supported by available conservation data.

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 41942.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000362031.10 ENSP00000355217.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000362031.10Link to Ensembl Protein Viewer:ENSP00000355217.5Re-query CCDS DB by Nucleotide ID:ENST00000362031Re-query CCDS DB by Protein ID:ENSP00000355217
Original member Current member NCBI NM_152233.4 NP_689419.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152233.4Link to Protein Sequence:NP_689419.3Re-query CCDS DB by Nucleotide ID:NM_152233Re-query CCDS DB by Protein ID:NP_689419Link to BLAST:NP_689419.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689419.3 406 Q9UNH7-1 406 100% 0 0

Chromosomal Locations for CCDS 41942.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 34563122 34563175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34567686 34567771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34567854 34568013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34575756 34575842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34581561 34581600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34586230 34586305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34593045 34593150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34597550 34597645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34603348 34603471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34605596 34605717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34608030 34608140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34609638 34609742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34629907 34629954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34630111 34630116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1221 nt):
ATGATGGAAGGCCTGGACGACGGCCCGGACTTCCTCTCAGAAGAGGACCGCGGACTTAAAGCAATAAATG
TAGATCTTCAAAGTGATGCTGCTCTGCAGGTGGACATTTCTGATGCTCTTAGTGAGCGGGATAAAGTAAA
ATTCACTGTTCACACAAAGAGTTCATTGCCAAATTTTAAACAAAACGAGTTTTCAGTTGTTCGGCAACAT
GAGGAATTTATCTGGCTTCATGATTCCTTTGTTGAAAATGAAGACTATGCAGGTTATATCATTCCACCAG
CACCACCAAGACCTGATTTTGATGCTTCAAGGGAAAAACTACAGAAGCTTGGTGAAGGAGAAGGGTCAAT
GACGAAGGAAGAATTCACAAAGATGAAACAGGAACTGGAAGCTGAATATTTGGCAATATTCAAGAAGACA
GTTGCGATGCATGAAGTGTTCCTGTGTCGTGTGGCAGCACATCCTATTTTGAGAAGAGATTTAAATTTCC
ATGTCTTCTTGGAATATAATCAAGATTTGAGTGTGCGAGGAAAAAATAAAAAAGAGAAACTTGAAGACTT
CTTTAAAAACATGGTTAAATCAGCAGATGGAGTAATCGTTTCAGGAGTAAAGGATGTAGATGATTTCTTT
GAGCACGAACGAACATTTCTTTTGGAGTATCATAACCGAGTTAAGGATGCATCTGCTAAATCTGATAGAA
TGACAAGATCCCACAAAAGTGCTGCAGATGATTACAATAGAATTGGTTCTTCATTATATGCTTTAGGAAC
TCAGGATTCTACAGATATATGCAAGTTTTTTCTCAAAGTTTCAGAACTGTTCGATAAAACAAGAAAAATA
GAAGCACGAGTGTCTGCTGATGAAGACCTCAAACTTTCTGATCTTTTAAAATATTACTTAAGAGAATCTC
AAGCTGCTAAGGATCTCCTGTATCGAAGGTCTAGGTCACTAGTGGATTATGAAAATGCTAATAAAGCACT
GGATAAAGCAAGAGCAAAAAATAAAGATGTTCTACAGGCCGAAACTTCCCAACAATTATGTTGTCAGAAA
TTTGAAAAAATATCTGAGTCTGCAAAACAAGAACTTATAGATTTTAAGACAAGAAGAGTTGCTGCATTCA
GAAAAAATTTAGTGGAACTGGCAGAGTTAGAACTGAAGCATGCAAAGGGTAATCTACAGTTGCTGCAGAA
CTGCCTGGCAGTGTTAAATGGAGACACATAA

Translation (406 aa):
MMEGLDDGPDFLSEEDRGLKAINVDLQSDAALQVDISDALSERDKVKFTVHTKSSLPNFKQNEFSVVRQH
EEFIWLHDSFVENEDYAGYIIPPAPPRPDFDASREKLQKLGEGEGSMTKEEFTKMKQELEAEYLAIFKKT
VAMHEVFLCRVAAHPILRRDLNFHVFLEYNQDLSVRGKNKKEKLEDFFKNMVKSADGVIVSGVKDVDDFF
EHERTFLLEYHNRVKDASAKSDRMTRSHKSAADDYNRIGSSLYALGTQDSTDICKFFLKVSELFDKTRKI
EARVSADEDLKLSDLLKYYLRESQAAKDLLYRRSRSLVDYENANKALDKARAKNKDVLQAETSQQLCCQK
FEKISESAKQELIDFKTRRVAAFRKNLVELAELELKHAKGNLQLLQNCLAVLNGDT


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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